Table 4 Select genes from all four intersection sets that are overexpressed in the scale-biter
Gene Group | Gene Name | Intersection Set | |||
|---|---|---|---|---|---|
Apoptosis | |||||
  aifm3 | apoptosis inducing factor, mitochondria associated 3 | 48hpf |  | 8dpf |  |
  aven | apoptosis, caspase activation inhibitor | 48hpf | 96hpf |  |  |
  bnip3 | BCL2/adenovirus E1B 19 kDa interacting protein 3 | 48hpf |  |  |  |
 LOC107103375 | caspase recruitment domain-containing protein 8-like |  | 96hpf |  |  |
Bardet–Biedl syndrome | |||||
  bbs12 | Bardet-Biedl syndrome 12 | 48hpf |  |  |  |
Calcium Signaling | |||||
  anxa11 | annexin A11 | 48hpf | 96hpf |  |  |
  calb2 | calbindin 2 | 48hpf |  |  |  |
  calcrl | calcitonin receptor like receptor | 48hpf |  |  |  |
 LOC107082646 | calpain-1 catalytic subunit-like | 48hpf |  |  |  |
 LOC107081484 | calpain-1 catalytic subunit-like | 48hpf |  |  |  |
 LOC107102261 (capn1a) | calpain-1 catalytic subunit-like | 48hpf |  |  |  |
 LOC107092503 | calpain-9-like | 48hpf | 96hpf | 8dpf |  |
 LOC107099392 | calpain-9-like |  | 96hpf |  |  |
  clstn3 | calsyntenin 3 | 48hpf |  |  |  |
 LOC107084037 (s100 s) | protein S100-A1-like | 48hpf | 96hpf |  |  |
Cell Adhesion | |||||
  ncam1 | neural cell adhesion molecule 1 | 48hpf |  |  |  |
 LOC107088148 | cadherin-like protein 26 |  |  | 8dpf |  |
 LOC107084761 | claudin-9-like |  |  | 8dpf |  |
Cell Cycle | |||||
  bora | bora, aurora kinase A activator | 48hpf | 96hpf |  |  |
Cytokine/Chemokine | |||||
 LOC107100215 (cxcr3.2) | C-X-C chemokine receptor type 3-like | 48hpf |  |  |  |
 LOC107100210 | C-X-C chemokine receptor type 4-B-like | 48hpf |  |  |  |
 LOC107091150 (il12rb2l) | interleukin-12 receptor subunit beta-2-like | 48hpf | 96hpf |  |  |
  il4r | interleukin 4 receptor |  |  |  | 15dpf |
 LOC107087156 (il2rb) | interleukin-2 receptor subunit beta-like |  |  |  | 15dpf |
 LOC107092801 (ngfr) | tumor necrosis factor receptor superfamily member 16-like | 48hpf |  |  |  |
  tnfrsf21 | tumor necrosis factor receptor superfamily member 21 | 48hpf | 96hpf |  |  |
  clcf1 | cardiotrophin-like cytokine factor 1 |  |  | 8dpf |  |
Chaperone/Heat Shock | |||||
 LOC107090055 (dnaja3b) | dnaJ homolog subfamily A member 3, mitochondrial-like |  | 96hpf |  |  |
 LOC107081529 | heat shock 70 kDa protein 12A–like |  |  |  | 15dpf |
Lipid Transport | |||||
 LOC107095514 | apolipoprotein A-IV-like | 48hpf |  |  |  |
  apof | apolipoprotein F | 48hpf |  |  |  |
Growth Factor | |||||
 LOC107086851 (ednrba) | endothelin B receptor-like | 48hpf |  |  |  |
 LOC107083579 (epha6) | ephrin type-A receptor 6-like | 48hpf |  |  |  |
 LOC107084161 | fibroblast growth factor 13-like | 48hpf |  |  |  |
  flt1 | fms-related tyrosine kinase 1 | 48hpf |  |  |  |
BMP | |||||
  bambi | BMP and activin membrane-bound inhibitor |  |  | 8dpf |  |
  bmpr1b | bone morphogenetic protein receptor type IB |  |  | 8dpf |  |
IFG signaling | |||||
  igfbp2 | insulin like growth factor binding protein 2 | 48hpf | 96hpf | 8dpf | 15dpf |
 LOC107084241 | insulin-like growth factor-binding protein 5 | 48hpf | 96hpf | 8dpf | 15dpf |
  igflr1 | IGF like family receptor 1 |  |  | 8dpf |  |
Matrix | |||||
  adam22 | ADAM metallopeptidase domain 22 | 48hpf |  |  |  |
  crtap | cartilage associated protein | 48hpf | 96hpf |  |  |
 LOC107101759 | collagen alpha-1(XXVIII) chain-like | 48hpf |  |  |  |
  col5a3 | collagen, type V, alpha 3 | 48hpf |  |  |  |
  col16a1 | collagen, type XVI, alpha 1 | 48hpf |  |  |  |
 LOC107098087 (col8a1b) | collagen alpha-1(VIII) chain-like |  | 96hpf |  |  |
 LOC107101792 (col15a1b) | collagen alpha-1(XV) chain-like |  | 96hpf |  |  |
 LOC107084752 | integrin beta-3-like | 48hpf |  |  |  |
  fstl3 | follistatin-like 3 (secreted glycoprotein) | 48hpf |  |  |  |
 LOC107092333 (fndc7) | fibronectin type III domain-containing protein 7-like | 48hpf |  |  |  |
 LOC107081663 (mmp16b) | matrix metalloproteinase-16-like | 48hpf |  |  |  |
  otol1 | otolin 1 | 48hpf |  |  |  |
 LOC107089461 (phlda2) | pleckstrin homology-like domain family A member 2 | 48hpf |  |  |  |
  plekhh2 | pleckstrin homology, MyTH4 and FERM domain containing H2 | 48hpf | 96hpf | 8dpf | 15dpf |
  plod1 | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 | 48hpf |  |  |  |
 LOC107097692 (sparcl1) | SPARC-like protein 1 | 48hpf |  |  |  |
  smoc1 | SPARC related modular calcium binding 1 |  | 96hpf |  |  |
  fstl4 | follistatin-like 4 |  |  | 8dpf |  |
 LOC107101284 | thrombospondin type-1 domain-containing protein 7A–like |  |  | 8dpf |  |
 LOC107101285 | thrombospondin type-1 domain-containing protein 7A–like |  |  | 8dpf |  |
Muscle | |||||
 LOC107095331 | myosin-16-like | 48hpf |  |  |  |
 LOC107082773 (tpm1) | tropomyosin alpha-1 chain-like | 48hpf |  |  |  |
 LOC107089161 | troponin I, slow skeletal muscle-like | 48hpf | 96hpf |  |  |
Tgf-beta | |||||
  tgfbi | transforming growth factor beta induced | 48hpf |  |  |  |
Transciption Factor | |||||
  evx1 | even-skipped homeobox 1 | 48hpf |  |  |  |
  meox1 | mesenchyme homeobox 1 | 48hpf |  |  |  |
  sp4 | Sp4 transcription factor | 48hpf | 96hpf | 8dpf |  |
 LOC107087726 | sal-like protein 1 |  | 96hpf |  |  |
 LOC107093901 (ncoa3) | nuclear receptor coactivator 3-like |  | 96hpf | 8dpf |  |
  sall4 | spalt-like transcription factor 4 |  |  | 8dpf |  |
 LOC107084340 (mafb) | transcription factor Maf-like |  |  | 8dpf |  |
Wnt | |||||
  wnt11 | wingless-type MMTV integration site family member 11 | 48hpf |  |  |  |
  ilkap | ILK associated serine/threonine phosphatase |  | 96hpf |  |  |
Other | |||||
  lbh | limb bud and heart development | 48hpf |  |  |  |
 LOC107088691 (npdc1a) | neural proliferation differentiation and control protein 1-like | 48hpf |  |  |  |
  rps6kl1 | ribosomal protein S6 kinase like 1 | 48hpf | 96hpf |  |  |
 LOC107087452 | ribosomal protein S6 kinase beta-1-like |  |  | 8dpf | 15dpf |
 LOC107095875 | sex comb on midleg-like protein 4 | 48hpf |  |  |  |
 LOC107102698 | tissue factor-like | 48hpf |  |  |  |
  slc24a4 | solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 | 48hpf | 96hpf | 8dpf |  |
  acp7 | acid phosphatase 7, tartrate resistant (putative) |  |  | 8dpf |  |
  vwa1 | von Willebrand factor A domain containing 1 |  |  | 8dpf |  |
  vwde | von Willebrand factor D and EGF domains |  |  | 8dpf |  |
 LOC107081298 | von Willebrand factor-like |  |  | 8dpf |  |
  c1galt1 | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 |  |  |  | 15dpf |
  mpeg1 | macrophage expressed 1 |  |  |  | 15dpf |