Table 5 Select genes from all four intersection sets that are underexpressed in the scale-biter
Gene Group | Gene Name | Intersection Set | |||
|---|---|---|---|---|---|
Apoptosis | |||||
  api5 | apoptosis inhibitor 5 | 48hpf |  |  |  |
 LOC107081897 | caspase-1-like |  |  |  | 15dpf |
Bardet–Biedl syndrome | |||||
  bbs2 | Bardet-Biedl syndrome 2 | 48hpf | 96hpf |  |  |
  bbs5 | Bardet-Biedl syndrome 5 | 48hpf |  |  |  |
Calcium Signaling | |||||
 LOC107088690 | annexin A3-like | 48hpf |  |  |  |
  capn5 | calpain 5 | 48hpf |  |  |  |
  calu | calumenin | 48hpf |  |  |  |
Cell Adhesion | |||||
  cdh20 | cadherin 20, type 2 | 48hpf |  |  |  |
  cdh17 | cadherin 17, LI cadherin (liver-intestine) |  |  | 8dpf |  |
  cldn12 | claudin 12 | 48hpf |  |  |  |
 LOC107103695 | claudin-3-like | 48hpf |  |  |  |
 LOC107103700 | claudin-4-like | 48hpf |  |  |  |
 LOC107084763 | claudin-4-like |  |  | 8dpf |  |
 LOC107100707 | sialoadhesin-like |  |  |  | 15dpf |
Cell Cycle | |||||
  cdca7 | cell division cycle associated 7 | 48hpf |  |  |  |
  ccny | cyclin Y | 48hpf | 96hpf | 8dpf |  |
Cytokine/Chemokine | |||||
  il6st | interleukin 6 signal transducer | 48hpf | 96hpf |  | 15dpf |
 LOC107089554 | interleukin-21 receptor-like |  |  | 8dpf |  |
 LOC107096536 | C-C motif chemokine 3-like |  |  | 8dpf |  |
Chaperone/Heat Shock | |||||
 LOC107082103 | dnaJ homolog subfamily B member 9-like | 48hpf | 96hpf | 8dpf | 15dpf |
 LOC107091513 | dnaJ homolog subfamily C member 16-like | 48hpf |  | 8dpf |  |
 LOC107095621 | dnaJ homolog subfamily C member 3-like | 48hpf |  |  |  |
 LOC107088964 | dnaJ homolog subfamily B member 5-like |  | 96hpf |  |  |
Lipid Transport | |||||
  fabp6 | fatty acid binding protein 6, ileal | 48hpf |  |  |  |
 LOC107101094 | fatty acid-binding protein 10-A, liver basic-like | 48hpf |  |  |  |
  fabp3 | fatty acid binding protein 3, muscle and heart |  | 96hpf | 8dpf |  |
 LOC107096181 | fatty acid-binding protein, brain-like |  | 96hpf | 8dpf |  |
 LOC107081410 | fatty acid-binding protein, heart-like |  | 96hpf |  | 15dpf |
 LOC107086290 | fatty acid-binding protein, liver-type-like |  |  | 8dpf |  |
 LOC107082973 | apolipoprotein A-IV-like |  |  | 8dpf |  |
 LOC107095516 | apolipoprotein Eb-like |  |  | 8dpf |  |
Growth Factor | |||||
  sh2d3c | SH2 domain containing 3C |  |  | 8dpf |  |
BMP | |||||
 LOC107089450 | activin receptor type-2B-like | 48hpf | 96hpf |  |  |
Matrix | |||||
 LOC107082466 | cartilage acidic protein 1-like | 48hpf | 96hpf |  | 15dpf |
 LOC107093562 | collagen alpha-1(XXVIII) chain-like | 48hpf |  |  |  |
 LOC107094934 | collagen alpha-2(I) chain-like |  | 96hpf |  |  |
 LOC107086858 | collagen alpha-4(IV) chain-like |  |  | 8dpf |  |
 LOC107097307 | disintegrin and metalloproteinase domain-containing protein 10-like | 48hpf |  |  |  |
  fsd1 | fibronectin type III and SPRY domain containing 1 | 48hpf |  |  |  |
  fbln2 | fibulin 2 | 48hpf | 96hpf | 8dpf | 15dpf |
  plekhg1 | pleckstrin homology and RhoGEF domain containing G1 | 48hpf |  |  |  |
 LOC107097201 | integrin alpha-D-like |  | 96hpf |  |  |
Muscle | |||||
  myo7a | myosin VIIA | 48hpf |  |  |  |
 LOC107097407 | myosin-7B-like | 48hpf | 96hpf |  |  |
 LOC107087696 | myosin-11-like |  |  | 8dpf |  |
Tgf-beta | |||||
  tbrg4 | transforming growth factor beta regulator 4 | 48hpf |  |  |  |
Transciption Factor | |||||
  irx6 | iroquois homeobox 6 | 48hpf |  |  |  |
  gata6 | GATA binding protein 6 |  |  | 8dpf |  |
 LOC107090297 | GATA zinc finger domain-containing protein 14-like |  |  |  | 15dpf |
Wnt | |||||
  fzd9 | frizzled class receptor 9 | 48hpf |  |  |  |
  wnt2b | wingless-type MMTV integration site family member 2B | 48hpf |  |  |  |
 LOC107090002 | dixin-A-like |  | 96hpf | 8dpf |  |
 LOC107098026 | dickkopf-related protein 3-like |  |  |  | 15dpf |
Other | |||||
 LOC107101384 | adipocyte plasma membrane-associated protein-like | 48hpf |  |  |  |
  clptm1 | cleft lip and palate associated transmembrane protein 1 | 48hpf |  |  |  |
  fkbp2 | FK506 binding protein 2 | 48hpf |  |  |  |
  foxj3 | forkhead box J3 | 48hpf |  |  |  |
  oraov1 | oral cancer overexpressed 1 | 48hpf |  | 8dpf | 15dpf |
  smarcd2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 | 48hpf |  |  |  |
 LOC107105123 | syndecan-2-like | 48hpf |  |  |  |
 LOC107087936 | transcription regulator protein BACH1-like |  | 96hpf |  |  |
 LOC107083667 | alkaline phosphatase-like |  |  | 8dpf |  |
  setd6 | SET domain containing 6 | 48hpf | 96hpf | 8dpf | 15dpf |
  ptgr2 | prostaglandin reductase 2 |  |  |  | 15dpf |
 LOC107094401 | kallikrein-7-like |  |  |  | 15dpf |