From: Loci and candidate genes conferring resistance to soybean cyst nematode HG type 2.5.7
SNP | Chromosome | Position | -log10(p) | MAF | Model | Resistant allele | Susceptible alleles | Average FI of accessions with resistant allele | Average FI of accessions with susceptible allele | Average FI of population |
---|---|---|---|---|---|---|---|---|---|---|
rs7631207 | 8 | 7,631,207 | 11.89 | 0.12 | CMLM | C | G | 22.71 | 111.07 | 104.19 |
rs7640250 | 8 | 7,640,250 | 11.89 | 0.12 | CMLM | C | G | 22.71 | 111.07 | 104.19 |
rs7671170 | 8 | 7,671,170 | 11.89 | 0.12 | CMLM | G | C | 22.71 | 111.07 | 104.19 |
rs7662003 | 8 | 7,662,003 | 10.51 | 0.12 | CMLM | T | C | 39.36 | 110.13 | 104.19 |
rs7664479 | 8 | 7,664,479 | 10.51 | 0.14 | CMLM | C | A | 39.02 | 109.75 | 104.19 |
rs7622492 | 8 | 7,622,492 | 10.2 | 0.11 | CMLM | A | G | 24.19 | 110.39 | 104.19 |
rs7661660 | 8 | 7,661,660 | 9.82 | 0.12 | CMLM | C | A | 39.36 | 109.97 | 104.19 |
rs46625879 | 18 | 46,625,879 | 7.12 | 0.1 | CMLM | G | T | 44.55 | 107.59 | 104.19 |
rs36423980 | 7 | 36,423,980 | 5.74 | 0.17 | CMLM | A | G | 49.27 | 112.53 | 104.19 |
rs3853672 | 14 | 3,853,672 | 5.53 | 0.1 | CMLM | A | T | 53.89 | 107.40 | 104.19 |
rs7631207 | 8 | 7,631,207 | 11.89 | 0.12 | ECMLM | C | G | 22.71 | 111.07 | 104.19 |
rs7640250 | 8 | 7,640,250 | 11.89 | 0.12 | ECMLM | C | G | 22.71 | 111.07 | 104.19 |
rs7671170 | 8 | 7,671,170 | 11.89 | 0.12 | ECMLM | G | C | 22.71 | 111.07 | 104.19 |
rs7662003 | 8 | 7,662,003 | 10.51 | 0.12 | ECMLM | T | C | 39.36 | 110.13 | 104.19 |
rs7664479 | 8 | 7,664,479 | 10.51 | 0.14 | ECMLM | C | A | 39.02 | 109.75 | 104.19 |
rs7622492 | 8 | 7,622,492 | 10.2 | 0.11 | ECMLM | A | G | 24.19 | 110.39 | 104.19 |
rs7661660 | 8 | 7,661,660 | 9.82 | 0.12 | ECMLM | C | A | 39.36 | 109.97 | 104.19 |
rs46625879 | 18 | 46,625,879 | 7.12 | 0.1 | ECMLM | G | T | 44.55 | 107.59 | 104.19 |
rs36423980 | 7 | 36,423,980 | 5.74 | 0.17 | ECMLM | A | G | 49.27 | 112.53 | 104.19 |
rs3853672 | 14 | 3,853,672 | 5.53 | 0.1 | ECMLM | A | T | 53.89 | 107.40 | 104.19 |
rs7671170 | 8 | 7,671,170 | 38.91 | 0.12 | FARMCPU | G | C | 22.71 | 111.07 | 104.19 |
rs46625879 | 18 | 46,625,879 | 23.93 | 0.1 | FARMCPU | G | T | 44.55 | 107.59 | 104.19 |
rs35898587 | 7 | 35,898,587 | 19.04 | 0.07 | FARMCPU | A | C | 48.30 | 107.38 | 104.19 |
rs16268025 | 8 | 16,268,025 | 11.48 | 0.06 | FARMCPU | A | G | 71.46 | 106.50 | 104.19 |
rs38522986 | 15 | 38,522,986 | 6.12 | 0.05 | FARMCPU | A | G | 52.14 | 107.16 | 104.19 |