Species | Carbon source | Pre-treatment | Time-course | Technology | Total number of CAZymes genes upregulated | Reference |
---|---|---|---|---|---|---|
T. reesei QM9414 | Cellulose, sophorose and glucose | - | 24, 48 and 72 h, cellulose; 24 and 48 h, glucose; 2, 4 and 6 h, sophorose | RNA-seq (Illumina HiSeq 2000) | 21, sophorose; 25, cellulose; 17, glucosea | 42 |
T. reesei NG14 and RUT-C30 | Lactose and glucose | - | 1, 3, 6 and 24 h, microarray; 1, 6 and 24 h, RNA-Seq | Microarray and RNA-seq (Illumina HiSeq 2000) | 29, T. reesei NG 14; 26, T. reesei RUT C30b | 46 |
T. reesei QM6a | Wheat straw and glucose (control) | Ball milling | Wheat straw 24 h vs. glucose 48 h | RNA-seq (SOLiD 4) | 33, wheat strawc | 40 |
T. reesei QM9414 | Wheat straw, lactose and glucose (control) | Grinding and acid thermochemical | 50 h, wheat straw; 28 h, lactose | Microarray | 40, wheat straw; 7, lactose; | 41 |
T. reesei RUT-C30 | Ground bagasse (BO); steam-exploded bagasse (BS); enzymatically hydrolysed(BE); steam-exploded wheat straw(WH); steam-exploded spruce (SP); oat spelt xylan (XO); birch xylan (XB); avicel cellulose 1%(AV1); avicel cellulose 0.75% (AV0.75); sophorose (SO) | Ground (bagasse), enzymatically hydrolsed (bagasse), steam-exploded (spruce, wheat straw, bagasse) | Lignocellulosic substrate 6, 17, 41 and 65 h | Microarray | 87 (BO), 98 (BS), 124 (BE), 82 (WH), 51 (SP), 68 (XO), 94 (XB), 58 (AV1), 43 (AV0.75), 57 (SO) | 43 |
A. niger N402 | Willow and glucose | Ball milling | Willow 24 h vs. glucose 48 h | RNA-seq (SOLiD 5500) | 107, willowd | 31 |
A. niger N402 | Wheat straw | Ball milling | Glucose 48 h + wheat straw 6 and 24 h | RNA-seq (SOLiD 5500) | 64, wheat straw | 33 |
A. niger N402 | Wheat straw and glucose (control) | Ball milling | 24 h, wheat straw | RNA-seq (SOLiD 4) | 191, wheat straw d | 32 |
A. niger N402 | Sugarcane bagasse (SB) and fructose (control) | Steam-exploded | Fructose 24 h + SEB 6, 12 and 24 h | Microarray | 67, SB | 34 |