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Table 3 The main CAZymes related to biomass deconstruction upregulated in T. reesei RUT-C30 transcriptome

From: Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

ID JGI*

Descriptiona

Gene name

CAZy

Family

Peptide Signalb

log2FCc

Predicted substrate

6h

12h

24h

122518

Lytic polysaccharide monooxygenase

cel61b

AA9

Y

3.23

6.54

9.09

Cellulose and β-glucan

139633

Lytic polysaccharide monooxygenase

cel61a, egl4

AA9, CBM1

Y

3.84

6.10

8.59

Cellulose and β-glucan

136770

Acetyl esterase

aes1

CE16

Y

6.33

7.50

7.74

Xylan

5643

Candidate acetyl esterase

-

CE16

Y

1.30

1.45

1.07

Xylan

128705

Candidate acetyl xylan esterase

-

CE3

N

1.60

1.82

1.55

Xylan

35989

Candidate acetyl xylan esterase

-

CE3

N

-

-

1.34

Xylan

134377

Candidate acetyl xylan esterase

-

CE3

N

2.82

3.01

3.00

Xylan

88887

Candidate acetyl xylan esterase

-

CE5

N

4.83

6.01

8.93

Xylan

139631

Acetyl xylan esterase

axe1

CE5, CBM1

Y

4.44

6.46

9.12

Xylan

127115

β-glucosidase

bgl2, cel1a

GH1

N

3.78

4.57

5.96

Cellulose and β-glucan

77989

Candidate β-glucosidase

cel1b

GH1

N

1.78

2.42

2.83

Cellulose and β-glucan

23616

Endo-β-1,4-xylanase

xyn3

GH10

Y

2.69

4.78

8.53

Xylan

124931

Endo-β-1,4-xylanase

xyn2

GH11

Y

6.38

7.56

8.91

Xylan

134945

Candidate endo-β-1,4-xylanase

xyn5

GH11

N

5.54

6.06

6.80

Xylan

38418

Endo-β-1,4-xylanase

xyn1

GH11

Y

2.01

3.00

2.73

Xylan

25542

Candidate xylan-α-1,2-glucuronidase/α-(4-O-methyl)-glucuronidase

-

GH115

N

-

1.11

-

Xylan

124438

Endo-β-1,4-glucanase

egl3, cel12a

GH12

Y

1.74

5.38

8.96

Cellulose and β-glucan

140746

β-xylosidase

bxl1

GH3

Y

7.84

7.57

8.25

Xylan

25095

Candidate β-glucosidase

cel3b

GH3

Y

-

-

1.10

Cellulose and β-glucan

125268

Candidate β-glucosidase

cel3c

GH3

N

2.35

3.21

4.31

Cellulose and β-glucan

136547

β-glucosidase

bgl1/cel3a

GH3

N

1.75

3.61

7.14

Cellulose and β-glucan

122639

Candidate β-glucosidase

cel3d

GH3

N

3.23

4.17

5.76

Cellulose and β-glucan

74305

Candidate β-glucosidase

cel3e

GH3

Y

1.31

1.36

1.51

Cellulose and β-glucan

82126

Cand. β-glucosidase/glucan 1,4-β-glucosidase

bgl3f

GH3

Y

2.52

3.41

5.15

Cellulose and β-glucan

74129

Candidate β-xylosidase

xyl3b

GH3

N

2.12

2.70

1.99

Xylan

77521

Candidate β-xylosidase/α-L-arabinofuranosidase

-

GH43

N

4.21

4.76

5.31

Others

25940

Endo-β-1,4-glucanase

egl5, cel45a

GH45, CBM1

Y

2.95

5.41

8.52

Cellulose and β-glucan

72489

Endo-β-1,4-glucanase

egl2, cel5a

GH5, CBM1

Y

3.27

5.74

8.57

Cellulose and β-glucan

122377

β-Mannanase

man1

GH5, CBM1

Y

2.52

4.86

8.77

Mannan and galactomannan

102517

α-L-arabinofuranosidase I

abf1

GH54, CBM42

Y

2.55

1.51

-

Xylan

122470

Cellobiohydrolase

cbh2, cel6a

GH6, CBM1

Y

2.73

5.28

8.24

Cellulose and β-glucan

118070

Candidate α-L-arabinofuranosidase

abf2

GH62

Y

5.88

4.90

7.03

Xylan

90302

α-Glucuronidase

glr1

GH67

Y

6.96

7.33

7.62

Xylan

125125

Cellobiohydrolase

cbh1, cel7a

GH7, CBM1

Y

3.49

5.84

8.75

Cellulose and β-glucan

5304

Endo-β-1,4-glucanase

egl1, cel7b

GH7, CBM1

Y

2.63

5.05

8.39

Cellulose and β-glucan

111943

Xyloglucanase

cel74a

GH74, CBM1

Y

2.04

2.18

3.87

Xyloglucan

  1. a Trichoderma reesei RUT C30 v1.0 database from JGI was used to recover the T. reesei proteins ID and description; b The presence of signal peptide was predicted by SignalP 4.1 Server; c Log2 fold change
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BMC Genomics

ISSN: 1471-2164

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