Locus PGSC0003 | Chromosome: Mbp (v4.03) | Annotation | QUEST cases/controls SolCAP SNPs | QUEST cases/controls RADseq SNPs | PIN184 GWAS SolCAP SNPs | Function category |
---|---|---|---|---|---|---|
DMG400006283 | I:60.5 | ABC-transporter | - | TSC | TSC | Transport [64] |
DMG400006766 | I:64.6 | Conserved gene of unknown function | TSC, TSY | - | TSC | Unknown |
DMG400000010 | I:71.4 | Glycosyltransferase | - | TY | TSC | Cell wall biosynthesis [74] |
DMG400025878 | I:84.2 | Phenylpropanoid:glycosyltransferase 1 | TSC | - | TSC | Phenylpropanoid metabolism [75] |
DMG400030954 | I:86.4 | Beta-galactosidase | - | TSC, TY, TSY | TSC | Carbohydrate metabolism (uniprot/P48980) |
DMG400003324 | II:22.6 | Squalene epoxidase | - | TY, TSY | TSC | Cyclic triterpenoid biosynthesis [76] |
DMG400006975 | II:26.7 | Chloride channel/carrier, CLC-Nt2 | - | TSC, TY, TSY | TSC | Transport [77] |
DMG400001369 | II:45.4 | Kinase | - | TSC, TY, TSY | TSC | Phosphorylation of specific substrates (proteins, lipids, carbohydrates and others) |
Solyc03g065340 3 | III:? | Starch phosphorylase PHO1a | TSC | - | TSC | Starch degradation [17] |
DMG400025328 | III:53.3 | Plasma membrane ATPase 3 | - | TY, TSY | TSC | Providing energy for transport [78] |
DMG400024596 | III:54.1 | Protein kinase ATMRK1 | - | TSC | TSC | Posttranslational regulation [79] |
DMG401024510 | III:54.6 | Enolase | TSC | - | TSC | Glycolysis, central metabolism |
DMG400014223 | III:57.6 | 4-coumarate-CoA ligase 2 | - | TSC, TY | TSC | Phenylpropanoid biosynthesis (uniprot/O24146) |
DMG400029505 | IV:3.0 | NB-LRR protein required for HR- associated cell death 1 (NRC1) | - | TSC, TY | TSC | Biotic stress [80] |
DMG400011479 | IV:6.2 | Glycogenin-like starch initiation protein 6 | - | TSC, TY | TSC | Carbohydrate metabolism (AT5G18480) |
DMG400027236 | IV:9.8 | Transcriptional factor B3 | TSC | - | TSC | Transcription regulation (IPR003340) |
DMG400003751 | IV:70.2 | Bel1 homeotic protein | - | TSC, TY, TSY | TSC | Development [81] |
DMG400028325 | V:0.32 | Heparanase, family-79 endo-β-glucuronidase | - | TSC, TY, TSY | TSC | Carbohydrate metabolism https://www.cazypedia.org/index.php/Glycoside_Hydrolase_Family_79 |
Solyc05g010320 3 | V:1.4 | Chalcone-flavonone isomerase | TSC | - | TSC | Anthocyanin biosynthesis [82] |
DMG400000810 | V:2.0 | Di-glucose binding protein with Leucine-rich repeat domain, serine-threonine protein kinase | - | TSC, TY, TSY | TSC | Posttranslational regulation [79] |
DMG401012961 | V:2.1 | Aspartic proteinase nepenthesin-1 | - | TY, TSY | TSC | Protein degradation [83] |
DMG400031262 | V:5.0 | Methyltransferase | TSC, TSY | TSC, TY, TSY | TSC | Methylation of specific substrates |
Solyc05g007070 3 | V:5.9 | Alpha amylase 2 | TSC | - | TSC | Starch degradation |
Solyc05g007030 3 | V:6.0 | AT3g17900/MEB5_12 | TSC | - | TSC | Unknown |
DMG400018605 | V:10.3 | Binding protein | - | TY, TSY | TSC | Unknown |
DMG400023508 | V:50.6 | Kinase | - | TSC, TY, TSY | TSC | Phosphorylation of specific substrates (proteins, lipids, carbohydrates and others) |
DMG400004062 | VI:51.2 | DOF domain class transcription factor | - | TSC, TSY | TSC | Transcription regulation [84] |
DMG400033051 | VI:51.5 | Conserved gene of unknown function | - | TSC | TSC | Unknown |
DMG400033034 | VI:51.9 | Plasma membrane H+-ATPase | - | TSC, TY, TSY | TSC | Providing energy for transport [78] |
DMG402026985 | VI:52.6 | Kinase | - | TSC | TSC | Phosphorylation of specific substrates (proteins, lipids, carbohydrates and others) |
DMG400012129 | VIII:56.4 | Beta-amylase 8 | - | TSC, TY | TSC | Starch degradation |
DMG400003874 | IX: 4.8 | Splicing factor 3A subunit | - | TY, TSY | TSC | mRNA processing |
DMG400023084 | IX:8.5 | LMBR1 integral membrane family protein | - | TSC | TSC | Lysosomal membrane |
DMG400004415 | IX:15.6 | Kinase | - | TSC | TSC | Phosphorylation of specific substrates (proteins, lipids, carbohydrates and others) |
DMG400029885 | IX:19.2 | Kinase | TSC | TSC, TY | TSC | Phosphorylation of specific substrates (proteins, lipids, carbohydrates and others) |
DMG400027986 | IX: 33.7 | Copper ion binding protein | TSC | TSC, TY | TSC | Copper ion transport (IPR000428) |
DMG402017675 | IX:40.4 | Binding protein | - | TSC, TY | TSC | Unknown |
DMG400019363 | IX:47.7 | Ribosome-recycling factor, chloroplastic | - | TSC, TY, TSY | TSC | Chloroplast biogenesis [85] |
DMG400026430 | IX:59.3 | Beta-galactosidase | - | TSC, TY | TSC | Cell wall metabolism [86] |
DMG400019131 | X:50.6 | Tubulin beta-1 chain | - | TSC, TY, TSY | TSC | Cytoskeleton structure (uniprot/P12411) |
DMG403008663 | XI:32.9 | L-lactate dehydrogenase | - | TSC, TY | TSC | Anaeorbic glycolysis (IPR011304) |
DMG400004642 | XII:60.3 | Lipoyl synthase, chloroplastic | - | TSC | TSC | Protein modification by lipoylation (uniprot/Q8LEE8) |