Fig. 3
From: Mining sequence variations in representative polyploid sugarcane germplasm accessions
Simulation of read depth for single nucleotide polymorphism (SNP) calling. a Relationship between the expected number of reads and the sequencing depth required for minor alleles of single dose SNPs with different ploidy levels, hexaploid (6×), octoploid (8×), decaploid (10×), and dodecaploid (12×). b The average percentages of SNPs called with randomly sub-sampled read sets (20, 30, 40, 50, 60, 70, 80, and 90%) compared to the whole read set. The standard deviation of 10 times subsampled results were labeled as bars at the data points