Skip to main content

Table 4 List of the top-hit 30 InterPro domains in P.vera transcriptome

From: A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery

InterPro domain

Description

Number of sequence

IPR002885

Pentatricopeptide repeat

14,926

IPR000719

Protein kinase domain

50,94

IPR001611

Leucine-rich repeat

3983

IPR001680

WD40 repeat

2556

IPR000504

RNA recognition motif domain

1828

IPR019734

Tetratricopeptide repeat

1235

IPR002048

EF-hand domain

1185

IPR001245

Serine-threonine/tyrosine-protein kinase catalytic domain

1176

IPR001841

Zinc finger, RING-type

1155

IPR020683

Ankyrin repeat-containing domain

1055

IPR017986

WD40-repeat-containing domain

9,30

IPR002110

Ankyrin repeat

883

IPR018108

Mitochondrial substrate/solute carrier

839

IPR001650

Helicase, C-terminal

808

IPR003439

ABC transporter-like

719

IPR001128

Cytochrome P450

692

IPR002182

NB-ARC

632

IPR001810

F-box domain

562

IPR013026

Tetratricopeptide repeat-containing domain

538

IPR000571

Zinc finger, CCCH-type

517

IPR001932

PPM-type phosphatase domain

508

IPR017930

Myb domain

493

IPR011598

Myc-type, basic helix-loop-helix (bHLH) domain

489

IPR000048

ITE - IQ motif, EF-hand binding site

488

IPR005123

Oxoglutarate/iron-dependent dioxygenase

484

IPR011527

ABC transporter type 1, transmembrane domain

455

IPR013210

Leucine-rich repeat-containing N-terminal, plant-type

444

IPR000008

C2 domain

442

IPR001623

DnaJ domain

428

IPR014001

Helicase superfamily 1/2, ATP-binding domain

420