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Table 1 Summary of sRNA sequencing data from Mg-sufficient and -deficient Citrus sinensis roots

From: MicroRNA-mediated responses to long-term magnesium-deficiency in Citrus sinensis roots revealed by Illumina sequencing

 

Mg-sufficiency

 

Mg-deficiency

 

Unique sRNAs

Total sRNAs

Unique sRNAs

Total sRNAs

Raw reads

 

20,726,716

 

22,139,574

Clear reads

5,561,214(100%)

20,325,777(100%)

6,124,980(100%)

21,783,568(100%)

Mapped to genomic

3,077,845(55.34%)

13,624,836(67.03%)

3,378,231(55.15%)

14,510,776(66.61%)

á…ŸExon antisense

47,462(0.85%)

176,617(0.87%)

50,014(0.82%)

177,516(0.81%)

á…ŸExon sense

105,888(1.90%)

358,233(1.76%)

117,753(1.92%)

372,942(1.71%)

á…ŸIntron antisense

65,331(1.17%)

281,377(1.38%)

71,109(1.16%)

294,537(1.35%)

á…ŸIntron sense

88,455(1.59%)

520,695(2.56%)

94,926(1.55%)

557,578(2.55%)

á…ŸmiRNA

54,043(0.97%)

3,125,403(15.37%)

53,522(0.87%)

3,364,650(15.45%)

á…ŸrRNA

125,351(2.25%)

2,205,674(10.85%)

157,937(2.58%)

2,558,877(11.74%)

á…Ÿrepeat

1384(0.02%)

3652(0.02%)

1587(0.03%)

3946(0.02%)

á…ŸsnRNA

2722(0.05%)

9423(0.05%)

3188(0.05%)

10,142(0.05%)

á…ŸsnoRNA

1667(0.03%)

6123(0.03%)

1833(0.03%)

6354(0.03%)

á…ŸtRNA

18,177(0.33%)

767,772(3.78%)

22,291(0.36%)

660,793(3.03%)

á…ŸUnannotated sRNAs

5,050,734(90.82%)

12,870,808(63.32%)

5,550,820(90.63%)

13,776,233(63.24%)

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BMC Genomics

ISSN: 1471-2164

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