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Table 3 Error rate comparison between Omni-PolyA and state-of-the-art methods in GENCODE poly(A) data

From: Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA

Variant

Size

Error rate (%)

DPS

HMM_SVM

Omni-PolyA

AATAAA

24,310

25.49

27.91

23.96

ATTAAA

7098

25.59

33.48

24.20

TATAAA

1640

26.52

36.83

25.86

AGTAAA

1306

26.67

34.77

23.07

CATAAA

682

30.88

38.38

26.91

AATATA

634

24.41

36.98

22.06

GATAAA

528

28.11

37.31

23.26

AATACA

368

32.97

33.89

24.72

AAAAAG

342

31.18

41.76

29.41

ACTAAA

314

28.89

39.03

24.51

AAGAAA

250

31.60

36.00

26.80

AATAGA

100

34.00

40.00

23.00

Average

 

25.93

30.43

24.15

  1. One observes that the relative decrease of the weighted average error rate of Omni-PolyA compared to DPS and HMM_SVM is 6.86% and 20.63%, respectively