An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

Table 2 The effect of Core_thresh on the DUPN_DIP

Core_thresh	#Complexes	Precision	Recall	F-score	Sn	PPV	Accuracy
Core_thresh = 0	763	0.436	0.653	0.523	0.47	0.648	0.552
Core_thresh = 0.1	747	0.443	0.657	0.53	0.461	0.649	0.547
Core_thresh = 0.2	651	0.493	0.619	0.549	0.443	0.667	0.544
Core_thresh = 0.3	551	0.55	0.589	0.569	0.433	0.66	0.535
Core_thresh = 0.4	433	0.6	0.551	0.575	0.431	0.641	0.526
Core_thresh = 0.5	304	0.664	0.441	0.53	0.397	0.631	0.5
Core_thresh = 0.6	238	0.723	0.368	0.488	0.362	0.609	0.47
Core_thresh = 0.7	134	0.836	0.263	0.401	0.287	0.63	0.425
Core_thresh = 0.8	97	0.856	0.199	0.323	0.201	0.689	0.372
Core_thresh = 0.9	56	0.839	0.144	0.246	0.128	0.801	0.321
Core_thresh = 1.0	0	–	–	–	–	–	–

The ‘#Complexes’ refers to the number of identified complexes with different Core_thresh. The highest value in each row is in bold

ISSN: 1471-2164