Transcriptional analysis of sweet orange trees co-infected with ‘Candidatus Liberibacter asiaticus’ and mild or severe strains of Citrus tristeza virus

Fu, Shimin; Shao, Jonathan; Paul, Cristina; Zhou, Changyong; Hartung, John S.

doi:10.1186/s12864-017-4174-8

Table 2 Transcripts encoding ribosomal proteins were differentially regulated in Citrus sinensis in response to infection by CTV-B2/CaLas-B232 and CTV-B6/CaLas-B232

From: Transcriptional analysis of sweet orange trees co-infected with ‘Candidatus Liberibacter asiaticus’ and mild or severe strains of Citrus tristeza virus

Gene symbol	Transcript id_	AGI	Gene description	Log 2 Fold-change
Gene symbol	Citrus sinensis	AGI	Gene description	CTV-B2/ CaLas-B232	CTV-B6/ CaLas-B232
RPS5	orange1.1g021869m	AT2G33800	ribosomal protein S5 family protein		−1.42
RPS5	orange1.1g013474m	AT1G64880	ribosomal protein S5 family protein		−1.03
RPS6	orange1.1g027743m	AT1G64510	ribosomal protein S6 family protein		−1.71
RPS9	orange1.1g042358m	AT1G74970	ribosomal protein S9		−1.46
RPS10	orange1.1g041275m	AT3G13120	30S ribosomal protein S10, chloroplast, putative		−1.70
RPS13	orange1.1g030930m	AT5G14320	30S ribosomal protein S13, chloroplast (CS13)		−1.39
RPS17	orange1.1g033970m	AT1G79850	ribosomal protein S17		−1.48
RPS20	orange1.1g029900m	AT3G15190	chloroplast 30S ribosomal protein S20, putative	−1.11	−1.69
RPS1	orange1.1g015066m	AT5G30510	ribosomal protein S1		−1.57
GHS1/S21	orange1.1g030080m	AT3G27160	glucose hypersensitive1, structural constituent of ribosome		−1.86
RPS4B	orange1.1g024793m	AT5G07090	40S ribosomal protein S4 (RPS4B)		−1.12
RPS5A	orange1.1g028585m	AT3G11940	ribosomal protein 5A, structural constituent of ribosome		−1.16
RPS8A	orange1.1g044642m	AT5G20290	40S ribosomal protein S8 (RPS8A)		−1.06
RPS13A	orange1.1g031857m	AT4G00100	Arabidopsis thaliana ribosomal protein S13A		−1.02
RPS16A	orange1.1g032049m	AT2G09990	40S ribosomal protein S16		−1.04
RPS19C	orange1.1g032099m	AT5G61170	40S ribosomal protein S19 (RPS19C)		−1.04
RPS20B	orange1.1g033482m	AT3G47370	40S ribosomal protein S20 (RPS20B)		−1.14
RPS23B	orange1.1g032383m	AT5G02960	40S ribosomal protein S23 (RPS23B)		−1.46
RPS24B	orange1.1g032727m	AT5G28060	40S ribosomal protein S24 (RPS24B)		−1.77
RPS25	orange1.1g033931m	AT4G34555	40S ribosomal protein S25, putative		−1.48
RPS26C	orange1.1g032843m	AT3G56340	40S ribosomal protein S26 (RPS26C)		−1.13
PSRP3	orange1.1g030605m	AT1G68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3		−1.33
PSRP3	orange1.1g029878m	AT5G15760	plastid-specific 30S ribosomal protein 3, putative / PSRP-3		−1.44
PSRP3	orange1.1g030716m	AT1G68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3		−1.40
RPS30A	orange1.1g020955m	AT5G24490	30S ribosomal protein, putative	−1.09	−1.39
RPL3	orange1.1g023905m	AT2G43030	ribosomal protein L3 family protein		−1.64
RPL5	orange1.1g024440m	AT4G01310	ribosomal protein L5 family protein		−1.69
RPL6	orange1.1g027306m	AT1G05190	embryo defective 2394		−1.58
RPL9	orange1.1g029153m	AT3G44890	ribosomal protein L9		−1.81
RPL10	orange1.1g027713m	AT5G13510	ribosomal protein L10 family protein		−1.34
RPL13	orange1.1g026067m	AT1G78630	embryo defective 1473		−1.37
RPL15	orange1.1g024515m	AT3G25920	structural constituent of ribosome		−1.39
RPL17	orange1.1g041707m	AT3G54210	ribosomal protein L17 family protein		−1.79
RPL18	orange1.1g030804m	AT1G48350	ribosomal protein L18 family protein	−1.08	−1.94
RPL19	orange1.1g026573m	AT4G17560	ribosomal protein L19 family protein		−1.53
RPL21	orange1.1g027519m	AT1G35680	50S ribosomal protein L21, chloroplast/CL21		−1.72
RPL24	orange1.1g029417m	AT5G54600	50S ribosomal protein L24, chloroplast (CL24)		−1.98
RPL27	orange1.1g029509m	AT5G40950	ribosomal protein large subunit 27		−1.01
RPL28	orange1.1g031725m	AT2G33450	50S ribosomal protein L28, chloroplast (CL28)		−1.42
RPL29	orange1.1g030809m	AT5G65220	ribosomal protein L29 family protein		−1.32
RPL34	orange1.1g031306m	AT1G29070	ribosomal protein L34 family protein	−1.01	−2.10
RPL35	orange1.1g031865m	AT2G24090	ribosomal protein L35 family protein		−1.29
RPL3A	orange1.1g038172m	AT1G43170	Arabidopsis ribosomal protein 1		−1.61
RPL6B	orange1.1g026764m	AT1G74060	60S ribosomal protein L6 (RPL6B)		−1.17
RPL7C	orange1.1g026093m	AT2G44120	60S ribosomal protein L7 (RPL7C)		−1.14
RPL15A	orange1.1g028730m	AT4G16720	60S ribosomal protein L15 (RPL15A)		−1.16
RPL17B	orange1.1g030568m	AT1G67430	60S ribosomal protein L17 (RPL17B)		−1.17
RPL18C	orange1.1g030771m	AT5G27850	60S ribosomal protein L18 (RPL18C)		−1.27
RPL24A	orange1.1g031225m	AT2G36620	ribosomal protein L24		−1.05
RPL32A	orange1.1g032796m	AT4G18100	60S ribosomal protein L32A		−1.02
RPL37C	orange1.1g034400m	AT3G16080	60S ribosomal protein L37 (RPL37C)		−1.22
RPL7A	orange1.1g025016m	AT2G47610	60S ribosomal protein L7A (RPL7aA)		−1.02
RPL7A	orange1.1g024981m	AT3G62870	60S ribosomal protein L7A (RPL7aB)		−1.04
RPLP1	orange1.1g033944m	AT5G24510	60s acidic ribosomal protein P1, putative	1.92	1.75
RPP3A	orange1.1g033353m	AT4G25890	60S acidic ribosomal protein P3 (RPP3A)		−1.14
RPL18A	orange1.1g035537m	AT1G29970	60S ribosomal protein L18A-1		−1.40
RPL37A	orange1.1g044880m	AT3G10950	60S ribosomal protein L37a		−1.04
RRL13A	orange1.1g028649m	AT5G48760	60S ribosomal protein L13A	1.12
BBC1/L13	orange1.1g028624m	AT3G49010	Arabidopsis thaliana breast basic conserved 1		−1.92
^a	orange1.1g010232m	AT1G71720	S1 RNA-binding domain-containing protein		−1.21
^a	orange1.1g034489m	AT5G40080	60S ribosomal protein-related		1.46
^a	orange1.1g043340m	AT2G39670	radical SAM domain-containing protein		−1.58
^a	orange1.1g044572m	AT3G27180	unknown protein		−1.01

Note: ‘^a’ represents transcripts without gene symbol

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ISSN: 1471-2164

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