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Table 1 GGNGG enrichment at sites of SR45-dependent alternative splicing

From: Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

  

All

ΔΨ > 0

ΔΨ < 0

Event Type

Site

GGNGG per kb.

GGNGG per kb.

Enrichment

p-value

GGNGG per kb.

Enrichment

p-value

A3

UI5

0.60

2.86

4.76

2.8E-20

1.70

2.84

3.0E-04

A3

UI3

0.96

2.91

3.02

1.3E-10

1.68

1.75

6.7E-02

A3

ASE

2.69

11.73

3.98

1.3E-16

6.48

2.32

2.7E-03

A5

ASE

2.49

15.33

6.49

1.4E-48

4.08

1.62

9.5E-02

A5

DI5

0.87

4.35

5.02

7.7E-26

2.87

3.32

1.2E-08

A5

DI3

0.99

2.52

2.55

2.3E-05

2.39

2.42

2.3E-04

RI

UE

2.30

6.74

2.94

8.1E-29

3.98

1.73

2.3E-05

RI

ASE

1.90

11.28

6.29

2.2E-62

2.43

1.85

7.3E-03

RI

DE

3.70

10.58

2.86

1.3E-42

4.81

1.30

2.9E-02

  1. Enrichment statistics are shown only for GGNGG motif, and only for those sites that show significant enrichment (Additional file 11: Table S6) for either ΔΨ > 0, ΔΨ < 0, or both