Skip to main content

Table 1 Results of the ClonalFrame analysis

From: Genomic divergence and cohesion in a species of pelagic freshwater bacteria

Data

STs / genomes

# Sites

δ

r / m

π

μ / ρ

MLST

7 simplex, 2 amplus

7259

662 [249–1636]

1.3 [0.5–2.7]

0.0126

0.0094 [0.0047–0.0245]

MLST

7 simplex

7259

609 [230–1498]

4.1 [1.5–9.1]

0.0073

0.0018 [0.0008–0.0048]

genomes

7 simplex, 2 amplus

1,814,913

319a [305–333]

7.4 [6.9–7.8]

0.0111

0.0015 [0.0016–0.0014]

  1. STs sequence types, δ average tract length of recombination events, r/m ratio of probabilities that a given site has been altered through recombination and mutation, π average nucleotide diversity per site, μ/ρ, ratio of mutation to recombination calculated as π (r/m)−1 according to Fig. 4 in [23]. 95% confidence intervals are given in brackets
  2. aAs a result of the ClonalOrigin analysis a median δ of 2340 was obtained