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Table 2 Shimodaira-Hasegawa test for incongruence among tree topologies for different segments of the core genome alignment

From: Genomic divergence and cohesion in a species of pelagic freshwater bacteria

Segment

1

2

3

4

5

6

7

8

9

1

–

10,378

17,700

26,494

11,041

12,955

15,541

8745

12,441

2

7100

–

1908

11,511

4635

4823

5961

5295

8089

3

13,765

5472

–

13,087

10,540

15,234

10,690

10,714

10,508

4

14,493

11,159

7432

–

6411

9415

8898

12,331

13,047

5

13,057

8894

12,004

16,317

–

14,431

10,825

12,648

11,782

6

8979

7055

8418

5340

8223

–

2023

9517

8523

7

15,661

10,081

10,433

6309

11,983

4014

–

13,848

15,287

8

3819

3428

4378

8328

5980

3416

3095

–

3069

9

6474

4660

6312

9181

3951

4865

4985

2889

–

  1. For the sequence data of each segment (rows), the differences in log-likelihood scores between the original tree topology and each other tree topology (columns) are given.
  2. P-values for the differences are all lower than 0.001