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Table 8 The fat relevant genes with DMRs located in between 120 d and 240 d

From: Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Gene symbol

Log2(FC)a

p-value (DEG)

DMR width

Methylation difference

p-value (DMR)

Region

FASN

1.79

5.00E-05

9

−0.37

8.39E-10

Promoter (2-3 kb)

PVALB

2.45

5.00E-05

18

0.50

2.15E-07

Promoter (2-3 kb)

LSS

1.03

5.50E-04

15

−0.35

5.04E-13

Promoter (1-2 kb)

ACSF3

0.90

1.85E-03

82

−0.34

8.39E-08

Intron

GPER1

1.54

3.00E-04

26

−0.34

1.86E-06

3′ UTR

IGFBP7

0.93

4.90E-03

44

0.33

3.56E-06

Intron

ID2

1.27

1.50E-04

108

−0.39

9.78E-13

Distal Intergenic

SH3PXD2B

1.64

5.00E-05

67

−0.46

1.41E-15

Distal Intergenic

EGR1

3.25

5.00E-05

142

−0.40

2.85E-45

Intergenic

PEMT

1.09

5.00E-05

85

−0.31

4.50E-12

Distal Intergenic

ITGB2

1.22

1.00E-04

99

−0.34

2.32E-10

Distal Intergenic

  1. aFC: Fold-Change of FPKM in transcriptome data in 120 d vs 240 d