Table 2 General feature of H. villosa 4VS assembly
Type | Sub-type | Number | Average length (bp) | Total length (bp) | % in 4VS |
|---|---|---|---|---|---|
Protein coding gene | |||||
Evidenced gene | – | 1977 | 1301 | 2,571,967 | 1.51 |
Non-coding sequence | |||||
miRNA | – | 386 | 124.4 | 48,009 | 0.03 |
tRNA | – | 121 | 74.3 | 8995 | 0.01 |
rRNA | 0 | 0 | 0 | 0 | |
18S | 0 | 0 | 0 | 0 | |
28S | 0 | 0 | 0 | 0 | |
5.8S | 0 | 0 | 0 | 0 | |
5S | 0 | 0 | 0 | 0 | |
snRNA | 37 | 112.8 | 4175 | 0 | |
CD-box | 23 | 108.9 | 2505 | 0 | |
HACA-box | 12 | 117.8 | 1414 | 0 | |
splicing | 2 | 128 | 256 | 0 | |
Repetitive DNA | |||||
DNA transposon | – | – | – | 4,827,926 | 3.69 |
Retrotransposon | |||||
LTR | – | – | 65,945,121 | 50.47 | |
LINE | – | – | 2,171,029 | 1.66 | |
SINE | – | – | 14,703 | 0.01 | |
Other | – | – | 2711 | 0 | |
Unknown | – | – | 135,142 | 0.10 | |
Tandem repeat | – | 51,171 | 214.0 | 12,349,526 | 9.45 |