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Table 2 Selected differentially up-regulated genes and their functions in S. Typhi biofilm cells

From: Transcriptomic study of Salmonella enterica subspecies enterica serovar Typhi biofilm

Gene

Gene function

log2-fold change

p-value

q-value

STY1254

Hypothetical protein

7.92174

5.00E-05

0.00183687

STY1255

Hypothetical protein

3.85549

0.00045

0.00997957

yheA

Bacterioferritin-associated ferredoxin

3.55635

2.00E-04

0.00568281

rplD,rplW

50S ribosomal subunit protein L4, 50S ribosomal subunit protein L23

3.50218

7.00E-04

0.0133293

STY3469

Hypothetical protein

3.41257

5.00E-05

0.00183687

priB

30s ribosomal subunit protein S18

3.25938

2.00E-04

0.00568281

rpsS

50S ribosomal subunit protein L22

2.93416

5.00E-05

0.00183687

STY4905

Hypothetical protein

2.8976

5.00E-05

0.00183687

rplU

50S ribosomal subunit protein L21

2.76352

5.00E-05

0.00183687

rpmA

50S ribosomal subunit protein L27

2.74781

5.00E-05

0.00183687

rpsJ

50S ribosomal subunit protein L3

2.65265

5.00E-05

0.00183687

STY1229

Hypothetical protein

2.60152

2.00E-04

0.00568281

lexA

LexA repressor

2.58813

5.00E-05

0.00183687

rplV

30S ribosomal subunit protein S3

2.53445

0.00015

0.00458445

rpsI

30S ribosomal subunit protein S9

2.51349

5.00E-05

0.00183687

rplR

30S ribosomal subunit protein S5

2.4115

5.00E-05

0.00183687

rpsF

30s ribosomal protein S6

2.41089

5.00E-05

0.00183687

yhdG

tRNA-dihydrouridine synthase B

2.38131

1.00E-04

0.00324732

rplK

50S ribosomal subunit protein L11

2.35434

5.00E-05

0.00183687

marA,marR

Multiple antibiotic resistance protein MarA, multiple antibiotic resistance protein MarR

2.33256

0.00105

0.0185381

pdhR

Pyruvate dehydrogenase complex repressor

2.32856

5.00E-05

0.00183687

rplM

50S ribosomal subunit protein L13

2.32687

0.00135

0.022217

STY4034

Putative IS1351 transposase (pseudogene)

2.30975

0.00125

0.0211453

ygbA

Hypothetical protein

2.27833

5.00E-05

0.00183687

yfhP

DNA-binding transcriptional regulator IscR

2.27551

0.00065

0.0127099

rplA

50S ribosomal subunit protein L1

2.24644

0.00205

0.0288986

hmpA

Flavohemoprotein

2.19086

9.00E-04

0.0162045

rpsN

30S ribosomal subunit protein S8

2.18809

5.00E-05

0.00183687

rplB

30S ribosomal subunit protein S19

2.13394

2.00E-04

0.00568281

yejG

Hypothetical protein

2.06615

5.00E-05

0.00183687

STY1389

Cyclic-di-GMP-binding biofilm dispersal mediator protein

1.79388

0.00365

0.0443982