Skip to main content

Table 1 Statistics of sequenced reads and contigs

From: Whole-genome assembly of Babesia ovata and comparative genomics between closely related pathogens

Assembly method

Canu

Canu

Canu

HGAP3

Subtraction of unreliable contigs

Yes

No

No

No

total base pairs

14,453,397

16,393,820

14,312,816

16,481,566

# of contigs

91

228

206

533

N50 contig length

2,090,503

2,093,449

408,732

97,655

N50 contig rank

3

3

11

48

max contig length

3,702,329

3,692,619

1,286,507

529,343

# of MinION raw reads

458,947

458,947

458,947

0

# of MinION total base pairs

1,592,957,533

1,592,957,533

1,592,957,533

0

# of PacBio sub reads

388,599

388,599

0

388,599

# of PacBio total base pairs

954,792,480

954,792,480

0

954,792,480