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Table 2 Known miRNAs with significantly differential expression in sugarcane buds following cold treatment

From: miRNA alteration is an important mechanism in sugarcane response to low-temperature environment

miRNA

sequence

F0-std

F3-std

R0-std

R3-std

Fold change

F0-F3

R0-R3

miR1310

GAGGCATCGGGGGCGCAACGCC

8.32

29.24

15.78

30.98

1.81**

0.97

miR1520d

ATCAGAACTGGTACGGACAA

574.08

1917.98

1131.16

2620.83

−1.74**

1.21

miR157a

TTGACAGAAGATAGAGAGCAC

4.65

9.68

4.34

4.26

1.06**

−0.02

miR2199

TGATAACTTGACGGATCGC

59.42

179.46

129.61

272.82

1.59**

1.07**

miR2916

GGGGCTCGAAGACGATCAGAT

46.30

198.06

128.65

255.78

−2.10**

0.99

miR5054

TCCCCACGGACGGCGCCA

50.00

117.65

81.84

164.77

1.23**

1.00**

miR5059

CGTTCCTGGGCAGCAACACCA

35.92

97.80

84.02

201.88

1.44**

1.26**

miR5072

GTTCCCCAGCGGAGTCGCCA

2.16

7.70

5.34

20.97

1.82**

1.97**

miR5077

TTCACGTCGGGTTCACCA

104.90

321.31

104.90

321.30

1.62**

1.62**

miR5152-3p

AGTCCTGCTATACCCACCA

0.59

2.02

1.30

3.76

1.77**

1.52**

miR5575

TGGATTTTGGAATGTTTTGGT

0.39

1.98

3.03

2.23

2.32**

−0.44

miR5671

CATGGTGGTGACGGGTGAC

32.73

70.96

72.74

126.88

1.12**

0.80

miR5813

ACAGCAGGACGGTGGTCATGGA

63.41

206.30

132.57

269.48

1.70**

1.02**

miR6196

GGGACGAGAAAGATGGGAGGA

5.12

11.12

17.93

21.15

1.12

1.09**

miR6300

GTCGTTGTAGTATAGTGGTG

101.38

217.53

216.10

284.36

1.10**

0.40

miR6478

CCGACCTTAGCTCAGTTGGTA

14.70

32.52

30.53

51.46

1.14**

0.75

miR8155

CGTAACCTGGCTCCGATACCA

4.14

9.20

8.10

16.96

1.15**

1.06**

miR894

GTTTCACGTCGGGTTCACCA

334.04

1108.12

1040.41

2131.64

1.72**

1.03

miR160a

TGCCTGGCTCCCTGTATGCCA

13.92

4.43

4.64

8.89

−1.65**

0.94

miR169b

CAGCCAAGGATGACTTGCCGG

43.54

20.76

38.28

39.38

−1.06**

0.04

miR169e-3p

GGCAGTCTCCTTGGCTAGC

73.19

31.02

14.24

21.84

−1.24**

0.62

miR397-5p

TTGACTGCAGCGTTGATGAGC

9.82

12.34

2.30

3.64

1.12**

0.66

miR528-5p

TGGAAGGGGCATGCAGAGGAG

123.62

49.19

303.86

262.15

−1.32**

−0.21

miR5532

ATGGAAATTGATGACAAAGGGG

1.58

0.77

1.46

1.20

−1.03 *

−0.28

miR1861d

TGCGTCATCAGGCAGGAACTGG

3.30

15.34

2.22**

miR395o-3p

TGAAGTGTTTGGGTGAACTC

2.60

1.64

0.88

2.56

−0.66

1.54**

miR5221

AACGAGATGGTGTTTTACTT

3.00

14.23

2.24**

miR5242

TATTTAGAACAGGCGATGTCA

1.26

1.49

3.68

13.24

0.24

1.84**

miR5272f

GAATTGATTTGTGTTGGATAAATT

3.27

2.64

0.80

1.78

−0.30

1.14**

miR394a

TTGGCATTCTGTCCACCTCC

4.26

7.78

0.88

0.74

1.03**

−0.96

miR863-5p

TTATAGTCTTGTGGATCAAAT

0.23

1.53

2.73**

  1. F0 and F3 represent the bud sample from sugarcane cultivar FN39 with 0 h and 3 h cold (4 °C) treatment, respectively, while R0 and R3 represent the similar samples from cultivar ROC22, respectively. ** and * indicate a significant difference at p-value <0.01 and p-value <0.05, respectively. “---” indicates no expression