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Table 3 Alternative CDFs for the top Affymetrix® in situ oligonucleotide arrays found in GEO

From: Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest

GEO Platform

Number of Alternative CDFs

Number and Percent of Samples Using Alternative CDFs

GPL570

54

6403 (5.0%)

GPL1261

36

1984 (4.0%)

GPL1355

12

460 (2.4%)

GPL198

9

642 (4.8%)