Table 1 Correction of mutations of E. coli K-12 with two additional downsamples of the 50X data
From: Single molecule sequencing-guided scaffolding and correction of draft assemblies
Coverage | # of mutations | 50 | 100 | 150 | 200 | 300 | 400 | 500 |
|---|---|---|---|---|---|---|---|---|
50x | scaffolds | 1 | 1 | 3 | 1 | 2 | 9 | 7 |
| Â | Total running time | 23m35s | 25m | 26m37s | 27m41s | 32m15s | 37m51s | 38m29s |
| Â | Stage 1 time | 20m31s | 20m4s | 19m24s | 18m37s | 18m25s | 17m58s | 17m30s |
| Â | Stage 2 time | 3m4s | 4m56s | 7m13s | 9m4s | 13m50s | 19m53s | 20m59s |
| Â | Relocations | 1 | 1 | 3 | 2 | 3 | 6 | 5 |
| Â | Inversions | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Â | N50 | 4641851 | 4642418 | 3799940 | 4641735 | 4495031 | 1610858 | 2378162 |
25x | scaffolds | 3 | 3 | 7 | 16 | 14 | 23 | 39 |
| Â | Total running time | 17m47s | 18m47s | 20m8s | 20m56s | 23m31s | 27m2s | 26m7s |
| Â | Stage 1 time | 15m52s | 15m27s | 15m26s | 14m50s | 14m21s | 14m37s | 13m13s |
| Â | Stage 2 time | 1m56s | 3m20s | 4m42s | 6m6s | 9m10s | 12m25s | 12m54s |
| Â | Relocations | 2 | 1 | 2 | 1 | 3 | 7 | 12 |
| Â | Inversions | 0 | 0 | 0 | 0 | 1 | 3 | 7 |
| Â | N50 | 3046572 | 4641477 | 4638607 | 4641947 | 2781405 | 906635 | 1057202 |
12.5x | scaffolds | 20 | 11 | 18 | 31 | 59 | 74 | 120 |
| Â | Total running time | 16m28s | 16m43s | 17m17s | 17m32s | 18m32s | 19m34s | 18m33s |
| Â | Stage 1 time | 14m31s | 13m51s | 13m12s | 12m37s | 11m41s | 11m1s | 9m45s |
| Â | Stage 2 time | 1m57s | 2m52s | 4m5s | 4m55s | 6m51s | 8m33s | 8m48s |
| Â | Relocations | 3 | 1 | 3 | 6 | 7 | 9 | 11 |
| Â | Inversions | 0 | 0 | 2 | 2 | 1 | 6 | 8 |
| Â | N50 | 1592081 | 1150026 | 719436 | 730221 | 385833 | 276032 | 118970 |