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Table 3 The information of the significant SNP markers associated with 14 mineral compounds among the 292 spinach accessions using six statistical models, SMR_Qgene, SMR_tassel, GLM_tassel, MLM_tassel, CMLM_gapit, and EcMLM_gapit

From: Genetic diversity and association mapping of mineral element concentrations in spinach leaves

Trait

 

LOD value (−LOG(p))

R-squre (%)

MAF

 

Qgene

Tassel

GAPIT

Qgene

Tassel

Marker

SMR

SMR

GLM

MLM

cMLM

EcMLM

SMR

SMR

GLM

MLM

B

AYZV02030222_447

5.15

4.59

3.75

2.94

3.23

3.18

8.40

8.12

6.36

5.40

14.37

B

AYZV02101102_298

2.67

2.59

3.08

3.32

3.65

3.61

4.50

4.47

5.06

5.92

11.75

B

AYZV02164196_389

3.61

4.02

3.15

2.69

3.45

3.36

6.00

7.51

5.75

5.23

20.34

B

AYZV02164196_391

3.31

3.48

2.66

2.13

2.66

2.58

5.50

6.54

4.88

4.10

20.34

Ca

AYZV02244039_336

2.53

3.13

3.04

2.70

0.17

0.40

3.90

5.79

5.65

5.36

27.32

Co

AYZV02017731_35

5.64

5.75

4.16

3.77

2.99

2.38

10.30

9.80

6.26

6.15

9.92

Co

AYZV02073631_257

3.86

2.70

2.62

1.68

2.73

3.52

7.20

5.35

4.76

3.35

6.75

Co

AYZV02165009_136

3.28

3.41

3.03

2.67

2.90

2.14

6.20

5.37

4.31

4.03

9.07

Co

AYZV02217527_245

3.74

4.15

3.17

2.15

4.34

4.53

7.00

6.58

4.44

3.15

2.74

Co

AYZV02217549_245

3.74

3.65

2.53

1.83

2.59

2.69

7.00

6.96

4.43

3.45

3.38

Co

AYZV02220844_249

3.04

3.60

3.49

3.13

3.53

2.06

5.70

6.99

6.18

6.05

10.97

Co

AYZV02221073_190

3.41

4.18

3.19

2.96

2.28

2.10

6.40

7.15

4.81

4.80

23.63

Cu

AYZV02147304_383

3.01

3.27

3.62

3.01

3.27

3.30

4.60

5.22

5.62

4.98

14.09

Cu

AYZV02277499_79

2.75

3.45

4.67

3.66

3.21

3.33

4.20

5.76

7.49

6.43

43.30

Fe

AYZV02057049_393

4.68

4.61

4.90

4.41

0.10

0.12

7.10

7.33

7.54

7.35

11.90

Fe

AYZV02201149_106

2.85

4.08

5.48

4.74

0.44

0.10

4.40

7.43

9.36

9.37

23.45

Fe

AYZV02201149_51

2.65

3.01

3.59

3.21

0.45

0.05

4.10

5.58

6.27

6.27

24.14

Fe

AYZV02207926_4318

3.88

4.45

3.35

3.05

1.20

1.12

6.00

7.47

5.37

5.52

18.79

Fe

AYZV02225779_181

5.87

5.67

6.38

5.74

3.39

3.38

8.90

8.97

9.71

9.56

5.00

Fe

AYZV02296000_81

3.46

4.53

4.28

3.89

0.92

0.21

5.30

7.65

7.03

6.76

23.45

Mg

AYZV02113550_76

3.09

3.66

3.33

2.64

3.12

2.00

4.70

5.74

4.95

4.13

41.41

Mg

AYZV02144992_13

5.38

3.98

3.17

0.96

1.80

2.78

8.10

6.93

5.45

1.84

18.56

Mg

AYZV02176946_248

3.98

5.05

4.50

3.48

1.29

1.52

6.10

7.84

6.89

5.93

12.71

Mg

AYZV02297745_849

4.21

5.92

6.03

3.32

1.02

3.75

6.40

8.07

8.06

4.62

39.52

Mn

AYZV02026295_260

4.79

4.68

3.79

2.76

1.22

1.11

7.30

7.26

5.87

4.52

5.33

Mn

AYZV02136507_242

7.08

9.20

8.32

6.68

0.91

0.52

10.60

15.30

13.77

12.90

43.81

Mn

AYZV02136507_248

5.18

6.49

5.66

4.81

0.32

0.02

7.90

11.26

9.76

9.20

41.41

Mn

AYZV02245160_278

3.28

3.36

2.82

3.03

0.08

0.56

5.00

5.72

4.77

5.43

17.18

Mn

AYZV02281036_185

3.12

3.45

3.01

2.88

2.97

1.95

4.80

5.69

4.95

5.14

8.59

Mo

AYZV02092600_720

3.15

3.77

4.04

3.88

3.45

3.76

4.80

4.82

5.05

5.10

4.81

Na

AYZV02103789_734

3.52

3.65

2.87

2.50

2.10

2.06

5.40

4.93

3.61

3.17

13.57

Na

AYZV02156839_631

3.08

3.11

2.86

2.68

0.02

0.07

4.70

5.30

4.77

4.93

23.54

Na

AYZV02178194_42

3.38

4.11

2.70

2.08

2.57

1.84

5.20

6.23

3.70

2.84

28.87

Na

AYZV02209560_3

3.77

4.59

3.42

2.84

3.16

3.31

5.80

6.29

4.40

3.72

13.40

Na

AYZV02225745_194

3.05

3.21

2.59

2.24

1.93

2.51

4.70

4.48

3.42

2.91

18.56

Ni

AYZV02051025_93

3.40

6.42

5.77

4.87

0.30

0.31

5.30

10.33

9.23

8.71

28.92

P

AYZV02105368_125

2.88

3.40

3.54

2.82

2.91

2.80

4.40

5.82

6.05

5.09

11.00

S

AYZV02017731_35

3.84

4.33

3.39

2.84

2.08

1.38

5.90

5.92

4.39

3.71

10.14

S

AYZV02057049_393

3.78

3.88

4.21

3.64

0.29

0.07

5.80

6.18

6.55

6.19

11.86

S

AYZV02073631_255

3.58

2.69

2.83

2.52

3.04

2.82

5.50

4.40

4.53

4.28

6.70

S

AYZV02073631_257

3.65

2.79

2.88

2.57

3.34

3.05

5.60

4.54

4.59

4.35

6.36

S

AYZV02094133_57

5.36

6.48

6.15

4.96

3.06

2.46

8.10

9.70

8.95

7.87

16.32

S

AYZV02225779_181

4.28

4.12

4.45

3.87

0.01

0.03

6.50

6.57

6.92

6.37

4.98

S

AYZV02248538_132

2.75

3.60

3.49

3.74

1.22

1.08

4.20

5.93

5.61

6.35

9.28

Zn

AYZV02066684_19177

3.71

3.24

3.19

2.72

0.66

0.57

5.70

5.46

4.97

5.44

14.95

Zn

AYZV02151846_237

3.06

5.43

3.09

2.17

2.53

1.71

4.70

8.58

4.29

3.49

36.08

Zn

AYZV02201848_2665

5.11

5.16

4.30

3.96

2.69

2.72

7.70

8.14

6.34

6.59

11.34

Zn

AYZV02212287_92

2.54

3.92

4.91

3.15

1.66

1.46

3.90

6.57

7.41

5.26

17.01

Zn

AYZV02212288_92

3.30

4.13

5.27

3.69

2.53

2.32

5.10

7.19

8.27

6.19

19.59

K

AYZV02123399_305

2.07

2.25

2.77

2.61

2.53

2.80

3.40

4.05

4.94

4.84

25.00

K

AYZV02147304_372

2.33

2.21

2.48

2.53

2.09

1.69

3.80

3.90

4.36

4.47

18.43