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Table 2 The number of predicted genes in 11 gene families for 21 defense-related traits in Arabidopsis

From: Inferring defense-related gene families in Arabidopsis and wheat

Phenotypea

ABC

Cupin

Kinase

NLR

P450

Peroxidase

Protease

START

TPRb

TFc

Transporter

Total

AvrPphB

4

9

2

1

9

1

1

2

5

6

0

40

AvrRpm1

1

8

1

1

12

0

0

4

14

5

2

48

AvrB

1

8

1

1

12

0

0

4

14

6

2

49

AvrRpt2

0

0

0

0

1

0

0

0

1

0

1

3

DC3000

14

16

3

5

32

1

0

8

28

24

7

138

LP23.1a

13

22

0

5

18

1

0

2

19

11

4

95

RMX23.1a

40

44

4

28

92

1

1

19

89

34

20

372

RMX3.1b

8

4

0

0

6

3

1

2

5

5

1

35

PNA3.3a

4

5

0

3

9

1

0

2

8

3

2

37

ME3.1b

65

79

8

39

126

14

8

36

162

54

36

627

LP23.1a CFU2

26

37

0

21

76

12

7

20

99

38

20

356

RMX23.1a CFU2

65

81

8

50

148

13

9

37

161

68

38

678

RMX3.1b CFU2

20

37

3

14

39

5

2

11

54

30

15

230

PNA3.3a CFU2

44

48

6

16

72

5

3

22

83

33

23

355

ME3.1b CFU2

11

15

1

8

21

1

1

3

16

5

1

83

Emco5

1

1

1

0

0

0

1

0

0

2

1

7

Emwa1

3

4

1

1

3

0

1

3

6

5

3

30

Emoy2

2

1

0

0

3

0

0

2

2

2

2

14

Hiks1

3

4

1

2

6

0

0

3

8

4

4

35

Noco2

1

2

0

1

5

0

0

2

5

2

0

18

Aphid number

10

6

0

5

4

0

0

1

8

4

1

39

  1. a See Additional file 2 for detailed description of 21 defense-related phenotypes
  2. bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
  3. c TPR, Tetratricopeptide repeat superfamily