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Table 4 The number of homologous SNPs in coding and non-coding regions of rust resistance genes for 11 gene families

From: Inferring defense-related gene families in Arabidopsis and wheat

Rust resistancea

ABC

Cupin

Kinase

NLR

P450

Peroxidase

Protease

START

TPRb

TFc

Transporter

Total

Lr17a

0

0

0

4237

0

0

0

0

0

33,270

0

37,507

Lr21

0

0

0

2275

0

0

0

0

0

0

0

2275

Lr27

0

0

490,734

193,899

0

0

0

0

0

0

0

684,633

Lr34

32,659

0

0

0

0

0

0

0

0

0

0

32,659

Lr37

0

0

0

0

0

0

0

5530

0

0

0

5530

Lr46

0

2482

0

0

0

0

0

0

0

2417

0

4899

Lr60

606

0

0

90,923

0

0

0

0

0

0

0

91,529

Lr68

18,963

0

0

27,110

0

0

0

8943

0

15,209

0

70,225

QSr.abr-

70,003

0

0

29,571

108,568

0

0

0

0

0

0

208,142

Sr13

2169

0

0

3760

0

0

0

0

0

0

0

5929

Sr2

0

74,738

0

0

0

0

0

0

0

0

0

74,738

Sr22

0

0

1077

0

114,579

0

0

0

459,695

0

0

575,351

Sr26

4036

155,936

0

0

0

0

118,953

0

0

0

0

278,925

Sr35

0

0

3836

0

0

0

0

0

0

0

0

3836

Sr36

0

0

0

0

0

109,350

0

0

0

192,982

0

302,332

Sr39

0

0

63,540

0

0

0

0

0

1342

0

0

64,882

Sr43

93,131

0

0

12,242

0

0

0

0

0

0

0

105,373

Sr45

1647

0

0

0

0

0

0

0

0

5225

0

6872

Sr56

0

0

1923

0

0

0

0

0

0

4278

0

6201

Yr24

0

0

0

0

0

0

0

0

0

21,030

0

21,030

Yr26

0

0

0

0

0

0

0

0

0

0

110,296

110,296

Yr36

0

0

4957

0

0

0

0

0

0

0

0

4957

Yr53

0

0

4250

0

0

0

0

0

0

0

0

4250

GSId

0.698

0.450

0.247

0.640

0.500

0.000

0.000

0.472

0.006

0.481

0.000

 
  1. aSome genes are known to confer resistance to multiple rusts and other pathogens and they include Lr34 (=Lr34/Yr18/Bdv1/Pm38/Ltn1), Lr37(=Lr37/Sr38/Yr17), Lr46(=Lr46/Yr29/Pm39/Ltn), Sr2(=Sr2/Lr27/PBC/Pm) and Sr39(=Sr39/Lr35)
  2. bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
  3. c TPR, Tetratricopeptide repeat superfamily
  4. dGSI = Gini-Simpson diversity index