Table 2 Normalized expression of MHC class IIB variants as well as select MHC class I and AMP sequences identified from transcriptome data of three Japanese Rana species, represented by TMM (trimmed mean of log expression ratio) values
Species | Gene or variant | Blood TMM | Skin TMM | Spleen TMM | S24 tadpole skin TMM | S29 tadpole body TMM |
|---|---|---|---|---|---|---|
R. japonica | MHCII-Raja01 | 0.7 | 5.4 | 169.3 | – | 0.0 |
MHCII-Raja03 | 9.1 | 44.3 | 382.3 | – | 0.4 | |
MHC class I | 139.5 | 27.2 | 142.7 | – | 6.3 | |
Brevinin-1Toa | 0.0 | 0.7 | 0.0 | – | 26.4 | |
Histone-H2B | 3.3 | 3.1 | 1.1 | – | 2.8 | |
Japonicin-1NPb | 0.0 | 22.5 | 0.2 | – | 0.0 | |
Japonicin-2Ja | 0.0 | 2573.5 | 1.9 | – | 0.3 | |
Preprobrevinin-1Ja | 0.0 | 327.0 | 0.2 | Â | 62.4 | |
R. ornativentris | MHCII-Raor01 | 57.6 | 46.6 | 84.1 | 0.0 | 0.6 |
MHC class I | 64.8 | 11.5 | 26.5 | 0.0 | 0.0 | |
Andersonin-R | 0.0 | 0.0 | 0.0 | 0.0 | 30.7 | |
Brevinin-1RTb | 0.5 | 760.2 | 1.0 | 0.0 | 0.0 | |
Histone-H2B | 1.9 | 1.7 | 2.0 | 6.5 | 9.9 | |
Japonicin-2Ja | 0.0 | 0.0 | 0.0 | 1.2 | 0.0 | |
Preprobrevinin-1Ka | 0.0 | 572.3 | 0.0 | 0.0 | 0.0 | |
Preproranatuerin-2Â Oe | 0.0 | 740.4 | 0.0 | 0.0 | 0.0 | |
R. t. tagoi | MHCII-Rata01 | 138.8 | 14.3 | 37.2 | – | – |
MHCII-Rata03 | 24.2 | 8.1 | 46.0 | – | – | |
MHC class I | 256.8 | 12.5 | 65.1 | – | – | |
Andersonin-R | 0.0 | 20.3 | 0.0 | – | – | |
Brevinin-1Toa | 0.0 | 222.0 | 0.0 | – | – | |
Histone-H2B | 0.1 | 9.2 | 0.7 | – | – | |
Japonicin-1NPb | 0.0 | 325.4 | 0.3 | – | – | |
Preprobrevinin-1Ka | 0.0 | 883.1 | 0.0 | – | – | |
Temporin-GN2 | 0.0 | 50.2 | 0.0 | – | – |