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Fig. 5 | BMC Genomics

Fig. 5

From: GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution

Fig. 5

Distribution of individuals’ raw scores during evolution on three “gold standard” gene families. The scores of the ML tree obtained with RAxML, the MPR tree for the DL score, and the reference gene tree of [44] are also shown. Note that for fair compairson, the RAxML tree reconciliation score correspond to the best rooting score, whereas the MPR tree sequence likelihood correspond to the tree with the minimum negative log likelihood in the set of equivalent MPR trees. For the sake of visibility, we increased the size of each data point. The “best tree” is expected to be located in the lower left corner. For the ATPase and Nox families, the reference tree was present in the set of pareto optimal trees returned by GATC. For the Popeye gene families, the reference tree was located in the proximity of a cluster of pareto optimal solutions

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