Fig. 5
From: High-throughput detection of RNA processing in bacteria
5’ Monophosphate processing patterns and their corresponding sequence motifs. Cleavage sites are derived from genome locations with 100 reads or more 1st bp coverage from our pRNA-Seq library. Peak shape refers to the number of mapped transcripts surrounding a cleavage site. Peak shapes were categorized using k-mean clustering. Motifs were calculated from peak shape clusters using MEME [68]. The graph at the top of each panel shows normalized peak height. The WebLogo [69] at the bottom of each panel shows the sequence motif associated with each peak shape. a The global motif, which is derived from the entire pRNA-Seq dataset. b the “Sharp” peak shape motif, shows strong similarity to the RNase E motif in E. coli [38]. c the “Tail L” motif and (d) the “Tail R” motif