Cultivars | Replicate | Total reads | Q30 bases (%) | Mapped reads | Uniquely mapped reads | Genes hit (%) |
---|
1533–15 | 1 | 29,823,880 | 90.39 | 20,347,924 | 11,054,222 | 78.84 |
2 | 18,850,340 | 89.45 | 12,991,256 | 8,067,224 | 76.39 |
3 | 53,681,314 | 87.82 | 36,390,339 | 19,694,642 | 84.75 |
4 | 32,211,588 | 90.49 | 21,458,754 | 9,324,847 | 74.73 |
CDC Pintium | 1 | 55,184,220 | 88.77 | 35,551,838 | 16,669,271 | 78.62 |
2 | 42,822,186 | 88.32 | 26,665,236 | 12,683,699 | 76.12 |
3 | 22,713,516 | 88.8 | 13,754,893 | 6,909,101 | 73.25 |
4 | 40,101,598 | 90.23 | 24,956,759 | 10,807,837 | 74.85 |
- Replicate: the variety replicate sequenced; total reads: the total number of sequence reads obtained; Q30 bases (%): the percentage of bases with > 30 quality in the sequencing results; mapped reads: the number of reads that mapped to one of the P. vulgaris transcript models; uniquely mapped reads: number of mapped reads mapping uniquely to a transcript model with a mapping quality ≥20; genes hit: number of gene models with one or more reads mapped to its transcript as a percentage of the total number of gene models
- Coverage of pinto bean cv 1533–15 and CDC Pintium seed coat transcriptome ranged from 73.25–84.75%