From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
 | AltHap | H-PoP | BP | ||||||
---|---|---|---|---|---|---|---|---|---|
Chromosome | CPR | MEC | t(sec) | CPR | MEC | t(sec) | CPR | MEC | t(sec) |
1 | 97.4 | 2011 | 11.26 | 95.7 | 2264 | 5.22 | 99.1 | 2321 | 8.17 |
2 | 95.3 | 2562 | 12.22 | 95.6 | 2971 | 5.65 | 89.5 | 2897 | 9.83 |
3 | 93.3 | 2084 | 10.38 | 91.2 | 2312 | 6.99 | 74.3 | 2367 | 8.30 |
4 | 96.9 | 2368 | 12.16 | 97.0 | 2648 | 5.24 | 74.8 | 2613 | 6.76 |
5 | 97.2 | 1924 | 9.96 | 96.6 | 2103 | 4.67 | 88.2 | 2185 | 4.76 |
6 | 94.9 | 3687 | 14.17 | 95.2 | 3343 | 4.93 | 88.7 | 3588 | 6.94 |
7 | 97.0 | 1846 | 11.19 | 92.4 | 1986 | 4.24 | 81.1 | 2073 | 7.88 |
8 | 96.2 | 1634 | 9.63 | 94.7 | 1848 | 4.14 | 88.5 | 1857 | 8.01 |
9 | 97.1 | 1272 | 6.42 | 91.0 | 1462 | 3.36 | 89.8 | 1491 | 6.13 |
10 | 96.8 | 1584 | 7.97 | 94.5 | 1683 | 3.67 | 90.8 | 1839 | 7.18 |
11 | 93.3 | 1394 | 7.45 | 91.5 | 1553 | 3.71 | 75.6 | 1586 | 6.69 |
12 | 92.1 | 1423 | 7.12 | 90.3 | 1570 | 3.46 | 74.4 | 1589 | 6.48 |
13 | 97.0 | 1269 | 4.42 | 94.1 | 1440 | 2.89 | 89.1 | 1409 | 5.38 |
14 | 90.3 | 857 | 9.53 | 97.1 | 974 | 2.54 | 70.0 | 995 | 4.53 |
15 | 97.2 | 941 | 9.42 | 97.4 | 1039 | 2.40 | 74.6 | 1063 | 3.92 |
16 | 96.7 | 1198 | 5.40 | 93.5 | 1192 | 2.47 | 79.7 | 1269 | 4.42 |
17 | 97.5 | 1146 | 4.58 | 91.1 | 1244 | 1.98 | 92.4 | 1234 | 3.15 |
18 | 91.0 | 860 | 4.54 | 97.6 | 893 | 2.51 | 82.0 | 942 | 3.79 |
19 | 97.6 | 618 | 3.32 | 97.8 | 695 | 1.82 | 98.0 | 1060 | 2.47 |
20 | 97.3 | 703 | 3.53 | 95.0 | 719 | 2.00 | 97.1 | 796 | 2.74 |
21 | 97.4 | 470 | 2.51 | 97.0 | 512 | 1.70 | 97.5 | 532 | 1.86 |
22 | 97.3 | 367 | 1.98 | 98.3 | 427 | 1.44 | 90.7 | 438 | 1.72 |
Mean | 95.8 | 1464 | 7.69 | 94.8 | 1585 | 3.50 | 85.0 | 1643 | 5.51 |
Sd | 2.27 | 780 | 3.54 | 2.54 | 790 | 1.49 | 8.94 | 793 | 2.32 |
# best | 9 | 0 | 0 | 5 | 0 | 5 | 3 | 0 | 0 |
 | HapTree | SCGD | ILP | ||||||
Chromosome | CPR | MEC | t(sec) | CPR | MEC | t(sec) | CPR | MEC | t(sec) |
1 | 84.1 | 2305 | 15.43 | 92.5 | 2456 | 3.62 | 95.6 | 1741 | 173.68 |
2 | 84.5 | 2875 | 17.59 | 92.6 | 3509 | 4.41 | 95.3 | 2219 | 190.37 |
3 | 85.2 | 2363 | 15.06 | 91.9 | 2498 | 3.40 | 95.6 | 1788 | 152.09 |
4 | 83.5 | 2604 | 18.67 | 92.7 | 3754 | 5.47 | 97.1 | 2048 | 168.56 |
5 | 84.8 | 2171 | 16.95 | 93.9 | 2750 | 3.54 | 95.4 | 1691 | 147.72 |
6 | 84.6 | 3583 | 23.86 | 93.0 | 5612 | 8.70 | 95.7 | 2643 | 181.51 |
7 | 84.7 | 2070 | 13.06 | 93.5 | 2826 | 3.95 | 95.4 | 1590 | 133.36 |
8 | 84.2 | 1838 | 14.81 | 90.7 | 1692 | 2.18 | 95.6 | 1472 | 136.60 |
9 | 85.1 | 1479 | 14.90 | 97.1 | 1885 | 2.94 | 95.2 | 1125 | 105.34 |
10 | 85.7 | 1823 | 12.13 | 92.6 | 1876 | 2.56 | 95.7 | 1354 | 120.89 |
11 | 83.6 | 1577 | 11.33 | 93.2 | 2265 | 2.95 | 95.2 | 1206 | 104.74 |
12 | 84.8 | 1589 | 9.97 | 92.3 | 1612 | 2.03 | 95.4 | 1214 | 103.88 |
13 | 82.8 | 1405 | 9.55 | 97.0 | 2947 | 3.31 | 95.5 | 1105 | 93.33 |
14 | 85.4 | 987 | 7.79 | 91.1 | 904 | 1.36 | 95.3 | 752 | 65.07 |
15 | 83.6 | 1061 | 7.43 | 99.1 | 1041 | 1.21 | 94.1 | 809 | 66.52 |
16 | 85.1 | 1273 | 8.13 | 93.0 | 1305 | 1.79 | 95.5 | 920 | 77.81 |
17 | 84.8 | 1230 | 6.34 | 96.7 | 2123 | 2.61 | 96.1 | 943 | 47.99 |
18 | 84.1 | 941 | 7.13 | 90.3 | 933 | 1.16 | 95.2 | 720 | 71.49 |
19 | 84.6 | 765 | 5.26 | 97.2 | 1290 | 3.25 | 96.6 | 533 | 44.32 |
20 | 86.9 | 795 | 6.08 | 96.8 | 949 | 1.38 | 95.8 | 612 | 54.30 |
21 | 86.3 | 528 | 5.05 | 94.3 | 499 | 0.63 | 95.2 | 415 | 31.82 |
22 | 86.9 | 436 | 4.65 | 94.1 | 422 | 0.74 | 95.2 | 316 | 31.89 |
Mean | 84.8 | 1623 | 11.42 | 93.9 | 2052 | 2.87 | 95.5 | 1237 | 104.69 |
Sd | 1.03 | 802 | 5.23 | 2.3 | 1222 | 1.80 | 0.57 | 612 | 50.37 |
# best | 0 | 0 | 0 | 1 | 0 | 17 | 5 | 22 | 0 |