From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
 | AltHap | H-PoP | BP | ||||||
---|---|---|---|---|---|---|---|---|---|
Chromosome | CPR | MEC | t(sec) | CPR | MEC | t(sec) | CPR | MEC | t(sec) |
1 | 95.5 | 9731 | 18.38 | 84.8 | 9845 | 2.13 | 87.6 | 9567 | 40.18 |
2 | 95.5 | 9589 | 38.89 | 90.4 | 9444 | 2.16 | 84.8 | 9698 | 42.90 |
3 | 91.7 | 7311 | 29.40 | 91.7 | 7182 | 1.79 | 84.7 | 7587 | 30.61 |
4 | 92.7 | 5508 | 26.69 | 92.6 | 5775 | 1.76 | 86.9 | 6288 | 31.10 |
5 | 92.0 | 6711 | 27.39 | 93.9 | 6910 | 1.95 | 86.3 | 6975 | 36.94 |
6 | 90.9 | 7213 | 33.68 | 88.5 | 7505 | 2.40 | 85.0 | 7590 | 41.20 |
7 | 90.7 | 6151 | 28.60 | 91.9 | 6829 | 1.68 | 85.8 | 6091 | 36.94 |
8 | 91.2 | 5927 | 23.82 | 90.2 | 6143 | 1.89 | 87.3 | 6282 | 38.87 |
9 | 91.8 | 5347 | 19.40 | 91.8 | 5719 | 1.76 | 85.1 | 5493 | 26.13 |
10 | 90.1 | 6044 | 24.07 | 92.4 | 6328 | 1.48 | 86.4 | 6503 | 27.65 |
11 | 90.8 | 5424 | 21.73 | 90.3 | 6432 | 1.68 | 85.8 | 5579 | 20.56 |
12 | 91.5 | 5456 | 24.25 | 91.4 | 5653 | 1.46 | 85.0 | 5706 | 24.19 |
13 | 90.4 | 3646 | 14.23 | 90.1 | 3708 | 1.54 | 82.7 | 3976 | 17.33 |
14 | 89.5 | 4156 | 18.64 | 89.1 | 4261 | 1.21 | 87.0 | 4004 | 14.84 |
15 | 90.0 | 4079 | 14.67 | 72.9 | 4001 | 1.06 | 82.3 | 4022 | 14.35 |
16 | 88.5 | 6197 | 26.28 | 71.5 | 6119 | 1.20 | 84.4 | 5112 | 29.51 |
17 | 89.7 | 4507 | 16.35 | 88.3 | 4911 | 1.22 | 87.6 | 4749 | 18.29 |
18 | 93.0 | 3080 | 12.68 | 90.8 | 3315 | 1.14 | 85.5 | 3457 | 13.31 |
19 | 85.7 | 4212 | 13.40 | 86.3 | 4115 | 0.84 | 83.5 | 3928 | 13.44 |
20 | 90.3 | 3512 | 13.64 | 90.0 | 4121 | 0.85 | 84.9 | 3814 | 15.97 |
21 | 92.7 | 1871 | 6.20 | 91.9 | 1974 | 0.68 | 87.2 | 1953 | 8.18 |
22 | 85.1 | 3654 | 17.24 | 87.8 | 3757 | 0.62 | 86.7 | 3910 | 14.72 |
mean | 90.9 | 5424 | 21.35 | 88.6 | 5639 | 1.48 | 85.6 | 5558 | 25.33 |
Sd | 2.5 | 1950 | 7.79 | 5.7 | 1934 | 0.50 | 1.5 | 1948 | 10.84 |
# best | 13 | 0 | 0 | 4 | 0 | 9 | 0 | 0 | 0 |
 | HapTree | SCGD | ILP | ||||||
Chromosome | CPR | MEC | t(sec) | CPR | MEC | t(sec) | CPR | MEC | t(sec) |
1 | 91.5 | 9676 | 6501 | 95.1 | 10127 | 2.59 | 79.0 | 6889 | 80.33 |
2 | 92.3 | 9802 | 7196 | 94.5 | 9721 | 2.41 | 76.1 | 6700 | 76.60 |
3 | 90.7 | 7705 | 4847 | 88.6 | 7410 | 1.83 | 76.9 | 5122 | 79.50 |
4 | 90.8 | 6500 | 8392 | 87.6 | 5494 | 1.48 | 77.0 | 4072 | 51.49 |
5 | 90.8 | 7094 | 5670 | 89.6 | 7058 | 1.71 | 76.0 | 4637 | 54.39 |
6 | - | - | - | 90.4 | 7843 | 2.14 | 75.7 | 5248 | 63.37 |
7 | 91.5 | 6169 | 5589 | 89.4 | 6189 | 1.73 | 77.9 | 4174 | 46.85 |
8 | 91.2 | 6379 | 8316 | 87.4 | 5996 | 1.47 | 76.3 | 4301 | 53.57 |
9 | 91.7 | 5513 | 4465 | 90.0 | 5592 | 1.20 | 76.8 | 3974 | 42.41 |
10 | 88.9 | 6553 | 4838 | 92.8 | 6027 | 1.60 | 76.8 | 4508 | 59.25 |
11 | 90.5 | 5625 | 5183 | 90.1 | 5662 | 1.34 | 79.0 | 3903 | 45.45 |
12 | 91.3 | 5770 | 5654 | 90.5 | 5731 | 1.55 | 77.5 | 3907 | 48.76 |
13 | 89.8 | 4029 | 5367 | 87.6 | 3727 | 0.79 | 77.1 | 2669 | 32.09 |
14 | 90.6 | 4038 | 4103 | 92.9 | 4859 | 1.12 | 75.4 | 2814 | 39.61 |
15 | 90.7 | 4116 | 3357 | 87.8 | 4442 | 0.88 | 78.7 | 2903 | 33.80 |
16 | 94.2 | 5142 | 9683 | 95.5 | 6474 | 1.60 | 79.8 | 3844 | 62.44 |
17 | 93.1 | 4806 | 3003 | 97.1 | 4843 | 1.01 | 80.8 | 3448 | 42.00 |
18 | 91.9 | 3493 | 2303 | 88.3 | 3478 | 0.71 | 76.9 | 2337 | 32.27 |
19 | 92.8 | 3953 | 1984 | 82.5 | 4204 | 0.87 | 78.6 | 2707 | 33.68 |
20 | 90.1 | 3886 | 1529 | 94.6 | 3790 | 0.83 | 78.7 | 2783 | 31.78 |
21 | 92.1 | 1979 | 1410 | 90.7 | 2042 | 0.36 | 77.2 | 1367 | 16.42 |
22 | 92.4 | 3307 | 1351 | 90.6 | 3495 | 1.06 | 77.0 | 2422 | 60.62 |
mean | 91.4 | 5502 | 4797.19 | 90.6 | 5645 | 1.38 | 77.6 | 3851 | 49.39 |
Sd | 1.2 | 1998 | 2392.54 | 3.4 | 1977 | 0.56 | 1.39 | 1360 | 16.82 |
# best | 4 | 0 | 0 | 4 | 0 | 13 | 0 | 22 | 0 |