Table 4 Performance comparison of AltHap, H-PoP, BP, and SCGD on a simulated biallelic triploid data set with haplotype block length m=1000. HapTree could not finish the simulations in 48 hours
From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
| Â | Â | AltHap | H-PoP | BP | SCGD | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Err | Cov | CPR | MEC | t(s) | CPR | MEC | t(s) | CPR | MEC | t(s) | CPR | MEC | t(s) |
0.002 | 10 | 98.2 | 322 | 30 | 71.5 | 3642 | 14 | 68.9 | 4210 | 132 | 69.7 | 11988 | 159 |
0.002 | 20 | 95.1 | 1986 | 59 | 73.1 | 7728 | 41 | 72.9 | 7762 | 416 | 51.8 | 35660 | 283 |
0.002 | 30 | 98.4 | 2412 | 109 | 70.8 | 12865 | 265 | 69.7 | 14751 | 1310 | 52.1 | 53248 | 422 |
0.01 | 10 | 91.7 | 1379 | 30 | 70.0 | 3786 | 14 | 68.1 | 4092 | 138 | 68.4 | 12108 | 161 |
0.01 | 20 | 97.7 | 1597 | 60 | 70.9 | 8375 | 42 | 68.9 | 8601 | 460 | 52.0 | 35606 | 295 |
0.01 | 30 | 98.9 | 3143 | 110 | 71.8 | 11769 | 266 | 68.1 | 15124 | 1301 | 52.7 | 53185 | 422 |
0.05 | 10 | 97.1 | 2802 | 31 | 70.1 | 3978 | 14 | 66.9 | 4227 | 135 | 67.5 | 13037 | 158 |
0.05 | 20 | 94.9 | 8222 | 59 | 70.3 | 9276 | 41 | 70.1 | 9484 | 460 | 51.7 | 35693 | 285 |
0.05 | 30 | 82.6 | 17284 | 110 | 71.3 | 13778 | 268 | 67.6 | 16876 | 1315 | 52.1 | 52499 | 431 |