Table 7 Performance of AltHap on simulated polyallelic triploid data set with haplotype block length m=1000. H-PoP, BP, HapTree, and SCGD cannot assemble polyallelic polyploid haplotypes
From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
Error rate | Cov | CPR | MEC | t(s) |
|---|---|---|---|---|
0.002 | 5 | 83.2 | 1377 | 43.05 |
0.002 | 10 | 93.2 | 897 | 115.13 |
0.002 | 15 | 93.5 | 1799 | 173.55 |
0.002 | 20 | 95.2 | 2346 | 232.07 |
0.01 | 5 | 74.7 | 2341 | 58.13 |
0.01 | 10 | 94.4 | 1269 | 115.41 |
0.01 | 15 | 90.9 | 3755 | 173.38 |
0.01 | 20 | 85.5 | 7272 | 235.86 |
0.05 | 5 | 79.9 | 3076 | 57.77 |
0.05 | 10 | 89.4 | 3925 | 116.33 |
0.05 | 15 | 93.1 | 6100 | 174.37 |
0.05 | 20 | 93.9 | 9120 | 236.73 |