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Table 1 Comparison of genome statistics to other nematode species

From: Improving eukaryotic genome annotation using single molecule mRNA sequencing

Species

Phylogenetic clade

# Genes

CEGMA completeness

Average gene length

Assembly Length (bp)

# Scaffolds

N50

GC content %

Contig Length

#

Length

Mean

Median

Max Length

Trichinella spiralis

I

16,380

95.6%

952.8

63,525,422

6863

4

6,373,445

33.9

9256

1071

12,041,450

Trichuris muris

I

11,004

96.1%

1245.7

84,674,602

1683

59

400,602

44.8

50,312

1914

1,774,400

Trichuris trichiura

I

8813

96.1%

1293.9

75,496,503

4156

265

70,602

42.2

18,166

3965

533,758

Ascaris suum

III

15,260

98.9%

1188.5

265,545,801

31,538

260

290,558

37.8

8420

226

1,465,500

Brugia malayi

III

18,074

97.4%

1012.2

94,136,243

9827

62

191,089

29.6

9579

1340

5,235,760

Dirofilaria immitis

III

12,857

98.0%

1134.2

88,309,529

16,061

219

71,281

28

5498

754

1,085,577

Loa loa

III

15,445

97.8%

987.8

91,373,458

5773

130

174,388

31

15,828

1186

1,325,655

Globodera pallida

IV

16,403

83.8%

1079.6

124,672,549

6873

298

121,687

36.7

18,139

1699

600,076

Meloidogyne hapla

IV

14,420

97.2%

1044.7

53,017,507

3452

372

37,608

27.4

15,358

5814

360,446

Caenorhabditis elegans

V

30,697

100.0%

1229.5

100,286,401

7

3

17,493,829

35.4

14,326,629

15,279,421

20,924,180

Haemonchus contortus

V

24,466

95.0%

1124.8

369,846,877

23,860

1151

83,287

43.1

15,501

1515

947,606

Necator americanus

V

19,153

97.2%

804.6

244,075,060

11,864

284

211,861

40.2

20,573

1315

1,890,151

Pristionchus pacificus

V

24,217

98.0%

994.3

172,494,865

18,083

39

1,244,534

42.8

9539

685

5,268,024

AC-Orig

V

16,155

98.9%

894.3

348,994,891

8098

263

373,206

43.5

43,096

1515

2,174,208

AC-PB

V

17,540

962.8