From: Improving eukaryotic genome annotation using single molecule mRNA sequencing
Read Type | Gene Set | Subset of genes | Total count | # of expressed genes (breadth ≥50%) | % expressed | Average read depth | |
---|---|---|---|---|---|---|---|
Any | Expressed | ||||||
Illumina Reads | AC-Orig | All genes | 16,026 | 10,405 | 64.9% | 161.1 | 245.6 |
Overlapping AC-PB genes | 15,808 | 10,254 | 64.9% | 160.9 | 245.5 | ||
Not overlapping AC-PB genes | 218 | 151 | 69.3% | 171.3 | 246.4 | ||
AC-PB | All genes | 17,540 | 11,721 | 66.8% | 156.3 | 231.6 | |
Overlapping AC-Orig genes | 15,931 | 10,365 | 65.1% | 158.3 | 240.8 | ||
Not overlapping AC-Orig genes | 1609 | 1356 | 84.3% | 136.5 | 161.1 | ||
Schwarz et al., [31] | 36,687 | 16,376 | 44.6% | 90.4 | 199.4 | ||
PacBio Reads | AC-Orig | All genes | 16,026 | 3166 | 19.8% | 3.3 | 8.9 |
Overlapping AC-PB genes | 15,808 | 3128 | 19.8% | 3.2 | 8.8 | ||
Not overlapping AC-PB genes | 218 | 38 | 17.4% | 4.1 | 12.8 | ||
AC-PB | All genes | 17,540 | 4209 | 24.0% | 3.6 | 8.8 | |
Overlapping AC-Orig genes | 15,931 | 3398 | 21.3% | 3.4 | 8.7 | ||
Not overlapping AC-Orig genes | 1609 | 811 | 50.4% | 6.4 | 9.1 | ||
Schwarz et al., [31] | 36,687 | 4903 | 13.4% | 2.1 | 8.8 |