From: ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
SRA Run Accession | Condition | Comment | Study Description | Reference |
---|---|---|---|---|
SRR891269 | EBV-transformed lymphoblastoid cell line | GM12878, 50Â k cells | Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position | [4] |
SRR891270 | EBV-transformed lymphoblastoid cell line | GM12878, 50Â k cells | ||
SRR891271 | EBV-transformed lymphoblastoid cell line | GM12878, 50Â k cells | ||
SRR891272 | EBV-transformed lymphoblastoid cell line | GM12878, 500 cells | ||
SRR891274 | EBV-transformed lymphoblastoid cell line | GM12878, 500 cells | ||
SRR891275 | CD4+ T-cells purified using negative selection | CD4+ T cells, day 1 | ||
SRR891276 | CD4+ T-cells purified using negative selection | CD4+ T cells, day 1 | ||
SRR891277 | CD4+ T-cells purified using negative selection | CD4+ T cells, day 2 | ||
SRR891278 | CD4+ T-cells purified using negative selection | CD4+ T cells, day 2 | ||
SRR3295017 | Uninfected | HFF_uninfected | Toxoplasma gondii remodels the cis-regulatory landscape of infected human host cells | [30] |
SRR3295018 | HFF cells, uninfected | HFF_uninfected | ||
SRR3295019 | HFF cells, uninfected | HFF_uninfected | ||
SRR3295020 | HFF cells infected with T. gondii | HFF_infected | ||
SRR3295021 | HFF cells infected with T. gondii | HFF_infected | ||
SRR3295022 | HFF cells infected with T. gondii | HFF_infected | ||
SRR5720369 | J-Lat A72 cells treated with DMSO | Replicate 1 | The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes | [29] |
SRR5720370 | J-Lat A72 cells treated with JQ1 | Replicate 1 | ||
SRR5720371 | J-Lat A72 cells treated with DMSO | Replicate 2 | ||
SRR5720372 | J-Lat A72 cells treated withJQ1 | Replicate 2 | ||
SRR5800797 | Breast cancer cell line T47D, multiH1sh Control | Replicate 1, 75 k cells | Analysis of the DNA accessibility upon knocking-down multiple histone H1 variants by ATAC-seq | Vallés AJ and Izquierd-Bouldstridge A., unpublished |
SRR5800798 | Breast cancer cell line T47D, multiH1sh Control | Replicate 2, 75Â k cells | ||
SRR5800799 | Breast cancer cell line T47D, multiH1sh Dox | Replicate 1, 75Â k cells | ||
SRR5800800 | Breast cancer cell line T47D, multiH1sh Dox | Replicate 2, 75Â k cells | ||
SRR5800801 | Breast cancer cell line T47D, RDsh control | Replicate 1, 75Â k cells | ||
SRR5800802 | Breast cancer cell line T47D, RDsh Dox Control | Replicate 1, 75Â k cells |