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Table 1 QTLs for male-sterile traits detected in this study

From: Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

Locus (marker name)

Linkage group

Position (cM)

LOD score

Phenotypic variation explained

EST name

Sequence position

SNP

Segregation type

Description

Length of EST (bp)

E-value

Homologous Arabidopsis locus

AX-115676114

9

33.414

99.99

100.0

MF_BC_CLC_contig_46230

309

A/G

lmxll

SNARE associated Golgi protein family

530

4.29

AT4G14950.2

AX-115695236

9

33.414

99.99

100.0

reCj11611

1639

A/G

lmxll

Glycosyl hydrolase family 47 protein

2558

0.00

AT5G43710.1

AX-115678020

9

33.414

99.99

100.0

reCj19250

1927

A/G

hkxhk

PRH75 DEAD box RNA helicase (PRH75)

2841

0.00

AT5G62190.1

AX-115675027

9

33.414

99.99

100.0

reCj19250

2335

A/G

hkxhk

PRH75 DEAD box RNA helicase (PRH75)

–

0.00

AT5G62190.1

AX-115677965

9

34.123

947.48

100.0

MF_BC_CLC_contig_27478

273

A/G

nnxnp

Pre-mRNA-splicing factor 3

2139

0.00

AT1G28060.1

AX-115681104

9

34.475

99.99

100.0

reCj19314

126

T/G

hkxhk

Galactosyltransferase family protein

2081

0.00

AT5G62620.1

AX-115669347

9

34.475

99.99

100.0

reCj19314

166

T/C

nnxnp

Galactosyltransferase family protein

–

0.00

AT5G62620.1

AX-115676564

9

34.475

99.99

100.0

reCj19314

432

A/G

nnxnp

Galactosyltransferase family protein

–

0.00

AT5G62620.1

AX-115664995

9

34.475

99.99

100.0

reCj19314

859

T/G

hkxhk

Galactosyltransferase family protein

–

0.00

AT5G62620.1

AX-115679030

9

34.475

99.99

100.0

reCj19314

1623

A/G

nnxnp

Galactosyltransferase family protein

–

0.00

AT5G62620.1

AX-115665901

9

34.475

99.99

100.0

reCj19314

2587

T/G

nnxnp

Galactosyltransferase family protein

–

0.00

AT5G62620.1