Table 1 Novel microRNAs identified in bovine monocyte-derived macrophages with or without challenge with lipopolysaccharides (LPS), Streptococcus agalactiae strains ST103 and ST12
provisional ID | mature read count | star read count | miRDeep2 score | example miRBase miRNA with the same seed | consensus mature sequence | precursor coordinate |
|---|---|---|---|---|---|---|
chr25_2078 | 63,905 | 8,00 | 32,589,40 | mmu-miR-106b-3p | ccgcacuguggguacuugcugc | chr25:36892057..36892117:+ |
chr8_3368 | 48,256,00 | 44,00 | 24,641,00 | hsa-let-7d-3p | cuauacgaccugcugccuuucu | chr8:86887438..86887514:+ |
chrX_3864 | 40,373,00 | 6,00 | 20,590,60 | hsa-miR-223-5p | cguguauuugacaagcugaguug | chrX:99936328..99936387:- |
chr7_3248 | 14,956,00 | 13,00 | 7636,00 | mmu-miR-24-1-5p | gugccuacugagcugaaacacag | chr7:12981645..12981702:- |
chr26_2162 | 10,315,00 | 54,00 | 5290,60 | eca-miR-146b-3p | ugcccuagggacucaguucuggu | chr26:22930915..22930975:+ |
chr11_440 | 4397,00 | 11,00 | 2251,80 | ssc-miR-181d-3p | accaccgaccguugacuguacc | chr11:95709449..95709509:+ |
chr8_3359 | 3633,00 | 95,00 | 1990,00 | mmu-miR-27b-5p | agagcuuagcugauuggugaaca | chr8:83009841..83009902:+ |
chr25_2117 | 3826,00 | 7,00 | 1958,50 | gra-miR7486h | cagcaacuaaagaucccucagg | chr25:34409297..34409357:- |
chr22_1816 | 3325,00 | 78,00 | 1741,70 | bmo-miR-3000 | cugcgcuuggauuucguuccc | chr22:51543484..51543548:+ |
chr3_2544 | 1854,00 | 9,00 | 951,00 | bta-miR-2285f | aaaaaccugaaugacccuuuug | chr3:94548590..94548649:+ |
chr8_3366 | 1064,00 | 754,00 | 932,60 | hsa-let-7a-3p | cuauacaaucuauugccuuccc | chr8:86885231..86885309:+ |
chr7_3219 | 1392,00 | 74,00 | 748,70 | hsa-miR-378a-5p | cuccugacuccagguccugugu | chr7:63067305..63067362:+ |
chr3_2643 | 863,00 | 137,00 | 513,90 | hsa-miR-30c-2-3p | cugggagaggguuguuuacucc | chr3:106059376..106059437:- |
chr16_1041 | 937,00 | 11,00 | 486,50 | hsa-miR-181a-3p | accaucgaccguugauuguacc | chr16:79685955..79686018:- |
chr14_712 | 672,00 | 34,00 | 364,10 | hsa-miR-30a-3p | cuuucagucagauguuugcugcu | chr14:8080297..8080360:+ |
chr1_143 | 643,00 | 10,00 | 335,60 | mmu-miR-15b-3p | cgaaucauuauuugcugcucuag | chr1:107923396..107923457:- |
chr12_549 | 565,00 | 17,00 | 301,20 | hsa-miR-92a-1-5p | agguugggaucgguugcaaugcu | chr12:66227265..66227321:+ |
chr1_111 | 475,00 | 6,00 | 249,50 | mmu-miR-125b-2-3p | acaagucaggcucuugggacc | chr1:19881359..19881419:- |
chr16_1003 | 359,00 | 103,00 | 240,00 | efu-miR-9283 | uguggccucuggguguguacccuc | chr16:33022297..33022356:- |
chrX_3750 | 463,00 | 6,00 | 240,00 | ssc-miR-374a-3p | uuaucagguuguauuguaauu | chrX:81951234..81951286:+ |
chr18_1154 | 297,00 | 42,00 | 181,00 | hsa-let-7e-3p | cuauacggccuccuagcuuucc | chr18:58015043..58015110:+ |
chr4_2734 | 287,00 | 41,00 | 168,50 | – | acacgcguccuuggauccugacu | chr4:119142851..119142912:+ |
chrX_3767 | 228,00 | 37,00 | 139,50 | hsa-miR-222-5p | cucaguagccaguguagaucc | chrX:103538171..103538234:+ |
chrX_3861 | 197,00 | 16,00 | 113,20 | hsa-let-7a-3p | cuauacaacuuacuacuuuccc | chrX:96382645..96382725:- |
chr19_1372 | 157,00 | 5,00 | 82,60 | – | agggagucccugguaguucagu | chr19:46741763..46741851:- |
chr19_1308 | 103,00 | 22,00 | 65,00 | – | ccccggcuuuuccucccccagg | chr19:62308493..62308542:+ |
chr5_2875 | 86,00 | 8,00 | 52,80 | ssc-miR-7134-5p | auguccgcggguucccugucc | chr5:112083860..112083922:+ |
chr19_1281 | 70,00 | 5,00 | 43,00 | hsa-miR-152-5p | agguucugugauacacuccgacu | chr19:39081179..39081236:+ |
chr18_1135 | 13,528,00 | 95,00 | 5,60 | mmu-miR-140-5p | cagugguuuuacccuaugguag | chr18:37088153..37088219:+ |
chr19_1237 | 93,00 | 15,00 | 5,40 | ahy-miR3511-5p | accagggcuggaagcugcuucu | chr19:9534051..9534107:+ |
chr2_1498 | 1928,00 | 20,00 | 5,30 | hsa-miR-26b-3p | ccuguucuccauuacuuggcucg | chr2:107133408..107133466:+ |