Table 2 Unique genes in L. casei ATCC393, L. gallinarum HDF4 and in L. delbrueckii strains as identified with GhostKOALA functional categories
KEGG orthology | L. casei ATCC393 | L. gallinarum HDF4 | L. delbruecki bulgaricus clade | L. delbrueckii diverse clade |
|---|---|---|---|---|
Carbohydrate metabolism | 11 | 5 | 7 | 1 |
Energy metabolism | 0 | 0 | 2 | 1 |
Lipid metabolism | 0 | 2 | 3 | 0 |
Nucleotide metabolism | 1 | 0 | 0 | 1 |
Amino acid metabolism | 1 | 3 | 3 | 3 |
Metabolism of other amino acid | 1 | 0 | 0 | 0 |
Glycan biosynthesis and metabolism | 2 | 0 | 0 | 0 |
Metabolism of cofactors and vitamins | 0 | 3 | 0 | 1 |
Metabolism of terpenoids and polyketides | 0 | 1 | 0 | 0 |
Biosynthesis of other secondary metabolites | 0 | 1 | 0 | 0 |
Xenobiotics biodegradation and metabolism | 0 | 0 | 3 | 0 |
Enzyme families | 2 | 1 | 0 | 0 |
Genetic Information Processing | 2 | 11 | 1 | 1 |
Environmental Information Processing | 7 | 9 | 6 | 0 |
Cellular Processes | 5 | 6 | 3 | 0 |
Organismal Systems | 1 | 0 | 0 | 0 |
Human Diseases | 1 | 2 | 2 | 0 |
Unclassified | 5 | 9 | 0 | 1 |
Annotated KEGG orthologous | 27a | 38a | 12a | 5 |
Hypothetical function | 186 | 143 | 30 | 5 |
Query dataset | 213 | 181 | 42 | 10 |