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Table 1 Genome assembly statistics for haddock (melAeg) compared with an ALLPATHS-LG assembly and two assemblies of Atlantic cod, one draft based on PacBio and 454 reads (GM_CA454PB) and the final gadMor2 assembly

From: Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats

 

melAeg

ALLPATHS-LG

GM_CA454PB

gadMor2

Length assembly (Mbp)

653

592

681

644

N50 scaffold (kbp)

209

169

272

1150

N50 contig (kbp)

78

4.4

95

116

CEGMA complete (% of 458 genes)

439 (96%)

428 (93%)

431 (94%)

435 (95%)

BUSCO single

4041 (88%)a

3562 (78%)a

3819 (83%)a

4160 (91%)a

BUSCO duplicated

128 (2.8%)a

92 (2.0%)a

117 (2.6%)a

127 (2.8%)a

BUSCO fragmented

203 (4.4%)a

407 (8.8%)a

359 (7.8%)a

139 (3.0%)a

BUSCO missing

212 (4.6%)a

523 (11%)a

289 (6.3%)a

158 (3.4%)a

  1. a% of 4584 genes