Skip to main content

Table 5 The number of hits for NACHT and FISNA domains in the unitig assemblies for cod and haddock, as a proxy for number of NLR genes. Substantially more hits are found in the unitigs that in the contigs of the final assemblies, indicating that many of the unitigs are not included, possibly because they are categorized as repetitive sequence

From: Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats

Domain

 

Haddock

Cod

NACHT

all

613

656

> 50% domain length

224

264

> 75% domain length

121

140

> 75% domain length, with stop codons

46

51

FISNA

all

611

552

> 50% domain length

553

505

> 75% domain length

384

359

> 75% domain length, with stop codons

75

107