Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Table 2 Genes contained in chloroplast genomes (113 genes in total)

Category	Group of gene	Name of gene
Self-replication	Ribosomal RNA genes	rrn4.5^a	rrn5^a	rrn16^a	rrn23^a
	Transfer RNA genes	trnA-UGC^a* trnF-GAA trnH-GUG trnL-CAA^a trnN-GUU^a trnR-UCU trnT-GGU trnW-CCA	trnC-GCA trnfM-CAU trnI-CAU^a trnL-UAA^* trnP-UGG trnS-GCU trnT-UGU trnY-GUA	trnD-GUC trnG-GCC^* trnI-GAU^a* trnL-UAG trnQ-UUG trnS-GGA trnV-GAC^a	trnE-UUC trnG-UCC trnK-UUU^* trnM-CAU trnR-ACG^a trnS-UGA trnV-UAC^*
	Small subunit of ribosome	rps2 rps8 rps15	rps3 rps11 rps16^*	rps4 rps12^a,b** rps18	rps7^a rps14 rps19
	Large subunit of ribosome	rpl2^a rpl22 rpl36	rpl14 rpl23^a	rpl16^* rpl32	rpl20 rpl33
	RNA polymerase subunits	rpoA	rpoB	rpoC1^*	rpoC2
Photosynthesis	Subunits of photosystem I	psaA psaJ	psaB ycf3^**	psaC	psaI
	Subunits of photosystem II	psbA psbE psbJ psbN	psbB psbF psbK psbT	psbC psbH psbL psbZ	psbD psbI psbM
	Subunits of cytochrome	petA petL	petB^* petN	petD^*	petG
	Subunits of ATP synthase	atpA atpH	atpB atpI	atpE	atpF^*
	Large subunit of Rubisco	rbcL
	Subunits of NADH Dehydrogenase	ndhA^* ndhE ndhI	ndhB^a* ndhF ndhJ	ndhC ndhG ndhK	ndhD ndhH
Other gene	Translational initiation factor	infA
	Maturase	matK
	Envelope membrane protein	cemA
	Subunit of acetyl-CoA	accD
	C-type cytochrome synthesis gene	ccsA
	Protease	clpP^**
Unknown function	Conserved open reading frames	ycf1^a (part)	ycf2^a	ycf4

^aTwo gene copies in IRs; ^b gene divided into two independent transcription units; one and two asterisks indicate one- and two-intron containing genes, respectively

ISSN: 1471-2164