Table 1 Analyses of clean reads in the chicken hypothalamus
Sample name | Raw reads | Clean reads | Mapping rate | Uniquely mapped rate | Exon% | Intron% | Intergenic% | GC content % | Average RPKM |
|---|---|---|---|---|---|---|---|---|---|
C1 | 63,306,944 | 61,717,348 | 82.01% | 81.11% | 60.3 | 6.6 | 33.1 | 49.10 | 21.17 |
C2 | 60,243,690 | 58,704,022 | 82.29% | 81.43% | 60.6 | 7.1 | 32.3 | 48.43 | 20.97 |
C3 | 62,219,776 | 60,616,596 | 82.35% | 81.45% | 61.1 | 7.1 | 31.8 | 48.58 | 20.79 |
HT1 | 68,168,766 | 66,327,478 | 82.3% | 81.41% | 60.5 | 7.7 | 31.8 | 48.34 | 21.07 |
HT2 | 61,505,548 | 59,694,092 | 82.29% | 81.4% | 60.8 | 7.6 | 31.6 | 48.50 | 21.16 |
HT3 | 57,359,412 | 55,863,346 | 82.46% | 81.58% | 61.3 | 7.2 | 31.5 | 48.69 | 21.28 |
LT1 | 60,860,822 | 59,147,790 | 81.87% | 80.99% | 62.2 | 7.5 | 30.2 | 48.88 | 20.94 |
LT2 | 59,589,616 | 57,924,762 | 82.99% | 82.12% | 63.3 | 6.3 | 30.4 | 48.44 | 21.24 |
LT3 | 61,706,770 | 60,178,970 | 82.93% | 82.06% | 63.7 | 6.8 | 29.5 | 48.51 | 21.28 |