From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content
 | DH4:YN4 | DH1:YN1 | DH1:DH4 | YN1:YN4 | ||||
---|---|---|---|---|---|---|---|---|
Up | Down | Up | Down | Up | Down | Up | Down | |
Cellular Component | ||||||||
 Other intracellular components | 754 | 693 | 668 | 580 | 475 | 396 | 377 | 205 |
 Chloroplast | 602 | 567 | 581 | 462 | 413 | 320 | 308 | 159 |
 Other cytoplasmic components | 636 | 469 | 531 | 403 | 361 | 321 | 280 | 161 |
 Other membranes | 531 | 482 | 466 | 483 | 374 | 290 | 284 | 156 |
 Unknown cellular components | 607 | 607 | 513 | 373 | 463 | 352 | 347 | 187 |
 Plastid | 291 | 343 | 260 | 303 | 174 | 151 | 246 | 122 |
 Plasma membrane | 438 | 381 | 421 | 326 | 262 | 240 | 133 | 79 |
 Nucleus | 392 | 227 | 331 | 200 | 247 | 203 | 181 | 107 |
 Other cellular components | 284 | 285 | 184 | 153 | 225 | 162 | 163 | 103 |
 Mitochondria | 198 | 191 | 210 | 188 | 125 | 94 | 97 | 55 |
 Cell wall | 127 | 123 | 115 | 88 | 75 | 66 | 64 | 40 |
 Cytosol | 121 | 102 | 106 | 80 | 66 | 66 | 56 | 31 |
 Extracellular | 110 | 82 | 82 | 62 | 66 | 62 | 44 | 33 |
 ER | 90 | 76 | 81 | 60 | 60 | 48 | 44 | 33 |
 Golgi apparatus | 49 | 43 | 40 | 37 | 31 | 26 | 18 | 12 |
 Ribosome | 23 | 23 | 23 | 18 | 16 | 13 | 10 | 8 |
Molecular Function | ||||||||
 Other enzyme activity | 515 | 695 | 439 | 383 | 492 | 295 | 383 | 216 |
 Unknown molecular functions | 650 | 471 | 578 | 515 | 341 | 376 | 259 | 156 |
 Other binding | 525 | 469 | 455 | 393 | 327 | 274 | 248 | 150 |
 Transferase activity | 295 | 308 | 243 | 229 | 211 | 186 | 188 | 100 |
 Hydrolase activity | 341 | 328 | 275 | 299 | 240 | 199 | 151 | 98 |
 Protein binding | 351 | 260 | 306 | 230 | 223 | 199 | 176 | 115 |
 Nucleotide binding | 279 | 132 | 231 | 217 | 131 | 96 | 139 | 53 |
 Kinase activity | 137 | 245 | 114 | 110 | 175 | 143 | 85 | 88 |
 DNA or RNA binding | 257 | 182 | 160 | 183 | 83 | 125 | 121 | 73 |
 Transporter activity | 164 | 201 | 197 | 131 | 153 | 93 | 70 | 56 |
 Other molecular functions | 185 | 157 | 143 | 110 | 122 | 93 | 103 | 45 |
 Transcription factor activity | 165 | 149 | 130 | 115 | 117 | 93 | 79 | 47 |
 Nucleic acid binding | 119 | 111 | 98 | 102 | 76 | 64 | 61 | 28 |
 Structural molecule activity | 35 | 22 | 28 | 25 | 26 | 16 | 20 | 8 |
 Receptor binding or activity | 15 | 18 | 17 | 12 | 16 | 10 | 9 | 5 |
Biological Process | ||||||||
 Other cellular processes | 1254 | 1145 | 1066 | 943 | 803 | 710 | 641 | 398 |
 Other metabolic processes | 1139 | 1016 | 974 | 860 | 754 | 664 | 597 | 364 |
 Unknown biological processes | 763 | 760 | 637 | 575 | 583 | 418 | 444 | 233 |
 Response to abiotic or biotic stimulus | 387 | 373 | 350 | 279 | 221 | 197 | 200 | 115 |
 Response to stress | 381 | 342 | 337 | 263 | 206 | 188 | 181 | 115 |
 Other biological processes | 353 | 334 | 325 | 269 | 215 | 197 | 183 | 105 |
 Protein metabolism | 375 | 359 | 333 | 317 | 247 | 229 | 130 | 127 |
 Developmental processes | 251 | 261 | 222 | 181 | 197 | 158 | 189 | 83 |
 Transport | 266 | 232 | 232 | 193 | 165 | 124 | 139 | 85 |
 Cell organization and biogenesis | 171 | 154 | 150 | 137 | 127 | 110 | 97 | 56 |
 Transcription | 159 | 146 | 130 | 119 | 104 | 88 | 73 | 42 |
 Electron transport or energy pathways | 81 | 74 | 61 | 54 | 51 | 31 | 45 | 17 |
 Signal transduction | 75 | 52 | 66 | 46 | 39 | 38 | 37 | 22 |
 DNA or RNA metabolism | 35 | 27 | 24 | 21 | 25 | 20 | 18 | 14 |