Table 4 Differential upregulation of peroxidase and laccase genes ≥ two-fold in stem sections of B. napus DH12075 (DH) and YN01–429 (YN)
From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content
Probe name | DH4: YN4 | DH1:YN1 | DH4:DH1 | YN4:YN1 | Corresponding Arabidopsis loci | Description |
|---|---|---|---|---|---|---|
Peroxidase genes | ||||||
 BN24392 | 2.23 |  |  |  | AT1G05260 | RARE COLD INDUCIBLE GENE 3 |
 BN18476 |  | 2.04 |  |  | AT1G09500 | similar to Eucalyptus gunnii alcohol dehydrogenase |
 BN10302 |  | 4.25 |  |  | AT1G12840 | ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C |
 BN21410 |  | 3.73 |  |  | AT1G15950 | CINNAMOYL COA REDUCTASE 1 |
 BN14306 | 2.16 |  | 2.54 |  | AT1G20620 | CATALASE 3 |
 BN18084 | 6.60 |  | 2.27 |  | AT1G20630 | CATALASE 1 |
 BN16003 | 2.56 |  |  |  | AT1G44970 | Peroxidase, putative |
 BN27576 |  |  | 2.14 |  | AT1G48130 | ARABIDOPSIS THALIANA 1-CYSTEINE PEROXIREDOXIN 1 |
 BN11140 |  |  |  | 2.02 | AT1G71695 | Peroxidase 12 |
 BN23842 |  | 2.50 |  |  | AT1G80820 | CINNAMOYL COA REDUCTASE |
 BN25563 |  | 2.41 |  |  | AT2G02400 | Cinnamoyl-CoA reductase family |
 BN13322 | 2.48 |  |  |  | AT2G25080 | GLUTATHIONE PEROXIDASE 1 |
 BN11700 | 2.0 |  |  |  | AT2G30860 | GLUTATHIONE S-TRANSFERASE PHI 9 |
 BN19562 | 3.68 |  |  |  | AT2G38380 | Peroxidase 22 (PER22) |
 BN15586 |  | 3.54 |  |  | AT2G40890 | CYP98A3, encodes coumarate 3-hydroxylase (C3H) |
 BN24228 |  |  | 2.77 |  | AT3G03670 | Peroxidase, putative |
 BN13555 | 2.09 |  |  |  | AT3G11630 | Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) |
 BN14781  82,83,84 |  | 4.72 |  |  | AT3G17390 | S-ADENOSYLMETHIONINE SYNTHETASE 3 |
 BN19400 | 7.76 |  |  |  | AT3G49110 | PEROXIDASE 33 |
 BN16513 | 4.57 |  | 2.62 | 2.02 | AT4G21960 | PEROXIDASE PRXR1 |
 BN24317 |  |  |  | 2.03 | AT4G26010 | Peroxidase, putative |
 BN23955 |  |  | 2.67 |  | AT4G30170 | Peroxidase, putative |
 BN27325  BN13535 | 4.35 |  | 2.17 | 2.17 | AT4G35000 | ASCORBATE PEROXIDASE 3 |
 BN16234 | 4.13 |  |  |  | AT4G36430 | Peroxidase, putative |
 BN22581 | 3.69 |  |  |  | AT4G37530 | Peroxidase, putative |
 BN14948 | 3.30 |  |  |  | AT5G06290 | 2-CYSTEINE PEROXIREDOXIN B |
 BN19087 |  | 2.29 |  |  | AT5G48930 | HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE |
 BN13706 |  | 5.01 |  |  | AT5G54160 | O-METHYLTRANSFERASE 1 |
Laccase genes | ||||||
 BN23268 |  |  | 2.17 |  | AT2G38080 | LACCASE-LIKE MULTICOPPER OXIDASE 4 |
 BN14150 | 3.23 |  |  |  | AT5G60020 | LACCASE 17 |