Identification of new loci involved in the host susceptibility to Salmonella Typhimurium in collaborative cross mice

Table 1 QTLs associated with host bacterial loads in spleen and liver post S. Typhimurium infection

QTL	Organ	Chr	-log10(P)	Peak position (Mb)	Sig. level	Interval (Mb)	Width (Mb)	All type genes	Protein coding genes	RNA genes	Unclassified genes	Unclassified non-coding RNA genes
Stsl1	spleen	8	4.7	12.5	0.95	11.3–17.0	5.7	144	50	68	23	3
Stsl2	spleen	10	3.8	52.3	0.9	46.4–54.0	7.6	62	24	30	6	2
Stsl3a	spleen	1	3.3	83.9	0.5	77.5–95.9	21.8	503	226	200	66	11
Stsl3b	spleen	1	3.0	79.2	0.5	74.1–81.8	21.8	503	226	200	66	11
Stsl4	liver	6	3.2	81.2	0.5	77.1–90.0	12.9	336	142	128	59	7
Stsl5	liver	17	3.1	84.8	0.5	80.5–91.1	10.6	177	61	94	12	10

QTL nomenclature, target organ, chromosome (Chr), negative log10 p-value (−log10(P)), peak position (in Mb, build mm9), genome-wide significance level (Sig. level), QTL position and Width (in Mb, build mm9) are given. Numbers of total genes, protein coding genes, RNA genes, unclassified genes and unclassified non-coding RNA genes within each QTL interval are also presented

ISSN: 1471-2164