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Table 2 Gene prediction statistics for Pyrenophora tritici-repentis isolates

From: Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Isolate M4 PacBio aBFPV1 BFPV2 134 239 5213 11137 86-124 AR CrossB10 DW5 DW7 SD20
Protein coding genes 13,797 12,171 11,969 11,072 11,239 11,142 11,034 12,525 12,086 10,880 10,908 10,715
Total length CDS (Mb) 18.22 16.40 17.46 15.82 15.96 15.91 15.86 15.82 15.49 15.51 15.25 13.85
bGenes (K) Supported by RNA-seq 7.8 e7.8 e8.3 7.1 7.1 7.1 7.2 e9.0 e9.0 7.0 e8.6 e7.1
% Complete fBUSCO 92.1 93.5 93.7 94.3 94 93.7 94.5 88.6 88.7 92.2 91.1 74.4
cPredicted effectors 224 260 179 188 190 193 184 246 227 186 191 184
dSupported by proteogenomics 1568 N/A N/A N/A N/A N/A 1868 N/A N/A 1681 N/A N/A
Predicted effectors supported by proteogenomics 79 N/A N/A N/A N/A N/A 78 N/A N/A 97 N/A N/A
  1. aGenBank version 1.0, bNo. of genes with RNA-seq support (100%). cNo. of genes with effector prediction (EffectorP score‚ÄČ>= 0.5). dNo. Genes with proteogenomics support overlap on same strand. eRNA-seq data pooled. fBenchmarking Universal Single-Copy Orthologs (BUSCO)