Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Table 3 M4 predicted effector genes with a high effector score (EffectorP score ≥ 0.933), BFP orthologues and detected in RNA-Seq data

M4 genes	^aEquivalent BFP genes	^d% Identity	^cM4 RNA-Seq
M4_1392	PTRG_11346,	100	N
M4_5669	PTRG_11771,	100	N
M4_5670	PTRG_11773	100	N
M4_1895	ToxA	100	Y
M4_1920	PTRG_04901	100	N
M4_2488	^eNA		Y
M4_3674	PTRG_01049	100	Y
M4_4087	PTRG_01437	100	Y
M4_4821	^eNA		N
M4_8650	PTRG_01823	100	N
M4_9875	PTRG_08470	99.54	Y
M4_10891	^bPTRG_06295	100	N
M4_11007	PTRG_07510	100	Y
M4_12104	PTRG_08870	100	Y
M4_13325	PTRG_09431	95.89	N
M4_13499	PTRG_09282	100	Y

^aBFP Locus ID, ^bPoor model match at locus, ^cM4 mRNA evidence support for gene. ^dPercentage Identity Blast global alignment between M4 and BFP genes. ^eGene sequence not identified in genome with greater than 90% identity and coverage (BLATX)

ISSN: 1471-2164