Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

Table 4 Argonautes annotation

Type	Family	Lineage			RKN			Other nematodes
			C. elegans		Mi		Mh	Gp	Gr	As	Ts
			Number	Sequences	Number	Transcriptional support	Number	Number	Number	Number	Number
Argonaute	AGO	miRNA	3	ALG-1, ALG-2, HPO-24	2	X	1	1	1	2	4
		sperm-enriched siRNA	2	ALG-3, ALG-4	0		0	0	0	1	86
		exogenous siRNA	2	RDE-1, ZK218.8	2	X	1	0	0	0	0
	PIWI	oogenesis-enriched siRNA	1	ERGO-1	0		0	0	0	0	0
	PIWI	piRNA	1	PRG-1, (PRG-2)	0		0	0	0	0	3
	WAGO	Cytoplasmic WAGO	8	WAGO-1, WAGO-2, WAGO-4, WAGO-5, SAGO-1, SAGO-2, PPW-1, PPW-2	15	X	4	6	9	1	0
		Nuclear WAGO	5	HRDE-1, NRDE-3, WAGO-10, WAGO-11, C14B1.7	4	X	2	5	5	0	0
		Self recognition pathway	2	CSR-1, C04F12.1	13	X	6	7	9	1	0

In C. elegans, the number and the names of Argonautes are indicated. Number of orthologs in M. incognita (Mi), M. hapla (Mh) and other nematodes of interest (G. pallida, Gp; G. rostochiensis, Gr; A. suum, As; T. spiralis, Ts) is indicated for each lineage. For M. incognita, presence of RNA-seq transcriptional support is indicated by a cross

ISSN: 1471-2164