Skip to main content

Table 2 Cis-regulatory elements in chickpea ARF promoters

From: Genome-wide identification of the auxin response factor gene family in Cicer arietinum

CRE

Motif

Querya

Promoters Observed

Total Occurrences Observedb

Avg. Number Occurrs. per promoter

Total Occurrs. Expectedc

Enrichment Factord

P-valuee

AGCBOXNPGLB

AGCCGCC

23

1

1

1.00

0.0575

17.39

0.0041

RAV1AAT

CAACA

23

22

93

4.23

31.02

3.00

0.0337

GT1GMSCAM4

GAAAAA

23

22

72

3.27

28.98

2.48

0.0327

Motif CTCTT

CTCTT

23

23

77

3.35

1.33

2.43

0.0325

SURE2STPAT21

AATACAAAA

23

3

3

1.00

1.58

1.90

0.0194

AuxRe1

TGTCTC

23

6

8

1.33

4.77

1.68

0.0293

WBBOXPCWRKY1

TTTGACY

23

7

8

1.14

1.37

1.41

 

MYCATERD22

CACATG

23

6

7

1.17

4.53

1.54

 

MYCATERD1

CATGTG

23

7

7

1.00

4.67

1.50

 

ABRE

ACGTGTC

23

1

1

1.00

0.69

1.45

 
  1. aTotal number of promoters in the query set
  2. bTotal number of motifs in the query set
  3. cTotal number of motifs expected to occur by chance/1.5 kb promoter based on nucleotide frequency in 23 promoter sequences
  4. dNumber of motifs observed divided by the number of motifs expected to occur by chance
  5. eProbabilities based on 2000 Monte Carlo simulations